SMTL ID : 5rz0.1

EPB41L3 PanDDA analysis group deposition -- Crystal Structure of the FERM domain of human EPB41L3 in complex with Z1497321453

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x K0A: (2,5-dimethyl-1,3-thiazol-4-yl)(pyrrolidin-1-yl)methanone(Non-covalent)

K0A.1: 7 residues within 4Å: Chain A: G.112, R.113, P.115, L.196, M.208, Y.219, R.222 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.196, A:M.208, A:Y.219 pi-Stacking: A:Y.219

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: I.11, L.12, L.13, G.15, D.107 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.81 Salt bridges: A:D.107 DMS.3: 5 residues within 4Å: Chain A: L.189, S.190, Y.192, V.194, L.217 No protein-ligand interaction detected (PLIP)

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: S.93, E.94, D.95, R.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.95, A:R.98 Water bridges: A:I.96 EDO.5: 3 residues within 4Å: Chain A: K.58, N.81, R.113 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.58, A:K.58 Water bridges: A:V.82, A:V.82, A:Q.104, A:D.107 EDO.6: 4 residues within 4Å: Chain A: R.113, V.194, D.195, L.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.194, A:L.196 EDO.7: 4 residues within 4Å: Chain A: R.106, E.148, F.149, R.150 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.106, A:R.106, A:R.150, A:R.150 EDO.8: 1 residues within 4Å: Chain A: R.267 No protein-ligand interaction detected (PLIP) EDO.9: 5 residues within 4Å: Chain A: Y.85, D.108, R.113, V.194, D.195 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.113 EDO.10: 3 residues within 4Å: Chain A: L.42, K.44, D.45 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.44, A:D.45, A:D.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., EPB41L3 PanDDA analysis group deposition. To Be Published

Release Date

2020-11-11

Peptides

Isoform 2 of Band 4.1-like protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 2 of Band 4.1-like protein 3

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