SMTL ID : 5rzq.1

EPB41L3 PanDDA analysis group deposition -- Crystal Structure of the FERM domain of human EPB41L3 in complex with Z100642432

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x WJ7: 2-bromo-4-fluoro-N,N-dimethylbenzamide(Non-covalent)

WJ7.1: 7 residues within 4Å: Chain A: W.230, V.233, L.234, K.235, I.236, V.277, H.280 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.230, A:V.233, A:H.280 Hydrogen bonds: A:I.236 pi-Stacking: A:H.280 Halogen bonds: A:W.230

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: I.11, L.12, L.13, G.15, D.107 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.81, A:N.81 Salt bridges: A:D.107 DMS.3: 3 residues within 4Å: Chain A: L.189, S.190, Y.192 No protein-ligand interaction detected (PLIP)

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: S.93, E.94, D.95 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.95 Water bridges: A:I.96, A:R.98 EDO.5: 4 residues within 4Å: Chain A: K.58, N.81, R.113 Ligands: EDO.9 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.58, A:K.58, A:Q.104 Water bridges: A:V.82, A:V.82, A:Q.104, A:D.107 EDO.6: 4 residues within 4Å: Chain A: R.113, V.194, D.195, L.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.194, A:L.196 EDO.7: 4 residues within 4Å: Chain A: R.106, E.148, F.149, R.150 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.106, A:R.106, A:E.148, A:R.150, A:R.150 EDO.8: 1 residues within 4Å: Chain A: R.267 No protein-ligand interaction detected (PLIP) EDO.9: 5 residues within 4Å: Chain A: Y.85, D.108, R.113, V.194 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bradshaw, W.J. et al., EPB41L3 PanDDA analysis group deposition. To Be Published

Release Date

2020-11-11

Peptides

Isoform 2 of Band 4.1-like protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 2 of Band 4.1-like protein 3

Related Entries With Identical Sequence