SMTL ID : 5s75.1 (1 other biounit)

XChem group deposition -- Crystal Structure of human ACVR1 in complex with FM010913a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

3 x LU8: 4-methyl-3-[4-(1-methylpiperidin-4-yl)phenyl]-5-(3,4,5-trimethoxyphenyl)pyridine(Non-covalent)

LU8.1: 18 residues within 4Å: Chain A: E.14, V.16, V.24, A.35, K.37, L.65, L.83, T.85, H.86, Y.87, H.88, E.89, G.91, K.142, N.143, L.145, A.155, D.156 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.16, A:V.16, A:A.35, A:Y.87, A:L.145, A:L.145 Hydrogen bonds: A:T.85, A:H.88 Water bridges: A:D.156 LU8.8: 8 residues within 4Å: Chain A: R.4, V.6, A.7, R.8, W.29, A.69 Ligands: LU8.9, EDO.16 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.8 Hydrogen bonds: A:A.7 Water bridges: A:R.4 LU8.9: 3 residues within 4Å: Chain A: W.29, I.68 Ligands: LU8.8 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.4

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: H.61, E.62, I.64, L.65, G.66, H.86, H.88, C.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.66, A:H.88 Water bridges: A:H.61 EDO.3: 7 residues within 4Å: Chain A: F.233, D.235, V.236, Q.255, R.256, P.257, N.258 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.258, A:N.258 Water bridges: A:F.233, A:N.258, A:N.258 EDO.4: 2 residues within 4Å: Chain A: R.247, V.252 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.247, A:R.247 EDO.5: 6 residues within 4Å: Chain A: R.182, F.233, Y.234, V.237, P.238, N.239 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.182, A:R.182, A:P.238 EDO.15: 7 residues within 4Å: Chain A: V.57, M.58, L.59, R.60, H.120, G.130, K.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.60, A:R.60, A:G.130 EDO.16: 2 residues within 4Å: Chain A: R.4 Ligands: LU8.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.4, A:R.4 EDO.17: 4 residues within 4Å: Chain A: N.223, I.225, R.262, S.265 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.223, A:S.265 Water bridges: A:S.222, A:R.262 EDO.18: 3 residues within 4Å: Chain A: G.19, R.20, Y.21 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.20, A:Y.21 EDO.19: 3 residues within 4Å: Chain A: R.218, K.230, Y.234 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.218, A:R.218 Water bridges: A:Y.234, A:Y.234

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 1 residues within 4Å: Chain A: H.86 No protein-ligand interaction detected (PLIP)

1 x SRT: S,R MESO-TARTARIC ACID(Non-covalent)

SRT.7: 3 residues within 4Å: Chain A: R.75, H.76, S.77 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.76, A:S.77

2 x HUH: 1~{H}-1,2,3-triazole(Non-covalent)

HUH.10: 4 residues within 4Å: Chain A: E.124, I.125, K.131, P.132 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.124 HUH.11: 3 residues within 4Å: Chain A: I.259, F.264, A.273 1 PLIP interactions: 1 interactions with chain A pi-Stacking: A:F.264

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.12: 3 residues within 4Å: Chain A: H.88, K.147, K.148 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.148 Water bridges: A:E.89, A:N.149 Salt bridges: A:H.88 SO4.13: 2 residues within 4Å: Chain A: P.260, N.261 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.261 Water bridges: A:R.262 SO4.14: 4 residues within 4Å: Chain A: R.182, N.239, D.240, P.241 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.240, A:D.240 Water bridges: A:R.182 Salt bridges: A:R.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, E.P. et al., XChem group deposition. To Be Published

Release Date

2021-06-23

Peptides

Activin receptor type-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Activin receptor type-1

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