SMTL ID : 5s7e.2 (1 other biounit)

XChem group deposition -- Crystal Structure of human ACVR1 in complex with FM010930a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

1 x LU8: 4-methyl-3-[4-(1-methylpiperidin-4-yl)phenyl]-5-(3,4,5-trimethoxyphenyl)pyridine(Non-covalent)

LU8.1: 18 residues within 4Å: Chain A: V.16, V.24, A.35, K.37, E.50, L.65, L.83, T.85, H.86, Y.87, H.88, G.91, D.95, K.142, N.143, L.145, A.155, D.156 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.16, A:V.16, A:V.24, A:A.35, A:Y.87, A:L.145 Hydrogen bonds: A:H.88 Water bridges: A:K.37, A:D.156 Salt bridges: A:D.95

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: H.88, K.147, K.148 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.148 Water bridges: A:E.89, A:V.146, A:N.149 Salt bridges: A:H.88 SO4.6: 3 residues within 4Å: Chain A: G.19, R.20, Y.21 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.20, A:Y.21 SO4.7: 2 residues within 4Å: Chain A: T.180, K.181 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.181 Water bridges: A:K.140, A:R.182 Salt bridges: A:K.181

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: F.233, D.235, V.236, Q.255, R.256, P.257, N.258 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.256, A:N.258 Water bridges: A:F.233, A:N.258, A:N.258, A:N.258 EDO.8: 8 residues within 4Å: Chain A: H.61, E.62, I.64, L.65, G.66, H.86, H.88, C.153 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.61, A:G.66 Water bridges: A:H.61, A:H.61, A:K.147 EDO.9: 3 residues within 4Å: Chain A: Y.281, Q.282, N.283 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.256, A:Q.282, A:N.283 Water bridges: A:W.280 EDO.10: 3 residues within 4Å: Chain A: V.221, G.224, V.226 No protein-ligand interaction detected (PLIP)

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 2 residues within 4Å: Chain A: R.292, K.295 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.292, A:R.292

1 x XEA: (3R)-1,2-oxazolidine-3-carbonitrile(Non-covalent)

XEA.5: 2 residues within 4Å: Chain A: P.260, N.261 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.261, A:N.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, E.P. et al., XChem group deposition. To Be Published

Release Date

2021-06-23

Peptides

Activin receptor type-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Activin receptor type-1

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