SMTL ID : 5s7i.2 (1 other biounit)

XChem group deposition -- Crystal Structure of human ACVR1 in complex with FM010928a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x LU8: 4-methyl-3-[4-(1-methylpiperidin-4-yl)phenyl]-5-(3,4,5-trimethoxyphenyl)pyridine(Non-covalent)

LU8.1: 18 residues within 4Å: Chain A: V.16, V.24, A.35, K.37, E.50, L.83, T.85, H.86, Y.87, H.88, G.91, D.95, K.142, N.143, L.145, A.155, D.156 Ligands: HV2.6 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.16, A:V.16, A:V.24, A:A.35, A:Y.87, A:D.95, A:L.145 Hydrogen bonds: A:H.88 Water bridges: A:D.156 Salt bridges: A:D.95

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: H.88, K.147, K.148 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.148 Water bridges: A:E.89, A:V.146, A:N.149 Salt bridges: A:H.88

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: F.233, D.235, V.236, Q.255, R.256, N.258 Ligands: HV2.10 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.255, A:N.258, A:N.258 Water bridges: A:F.233, A:N.258, A:N.258 EDO.14: 8 residues within 4Å: Chain A: H.61, E.62, I.64, L.65, G.66, H.86, H.88, C.153 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.61, A:G.66, A:H.86 Water bridges: A:H.61 EDO.15: 3 residues within 4Å: Chain A: Y.281, Q.282, N.283 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.282, A:N.283 EDO.16: 5 residues within 4Å: Chain A: Y.94, Q.98, Y.229, P.231 Ligands: EDO.17 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.94, A:Q.98 EDO.17: 5 residues within 4Å: Chain A: R.182, K.230, P.231, Y.234 Ligands: EDO.16 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.182 Water bridges: A:R.182 EDO.18: 3 residues within 4Å: Chain A: V.221, G.224, V.226 No protein-ligand interaction detected (PLIP)

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 2 residues within 4Å: Chain A: R.292, K.295 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.292, A:R.292

9 x HV2: 1,1-bis(oxidanylidene)thietan-3-ol(Non-covalent)

HV2.5: 4 residues within 4Å: Chain A: V.178, K.181, E.191, F.243 No protein-ligand interaction detected (PLIP) HV2.6: 8 residues within 4Å: Chain A: G.17, K.18, G.19, Y.21, G.22, V.24, K.37 Ligands: LU8.1 No protein-ligand interaction detected (PLIP) HV2.7: 7 residues within 4Å: Chain A: H.163, N.168, Q.169, L.170, D.196, C.197, F.198 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.198 Water bridges: A:D.199 HV2.8: 2 residues within 4Å: Chain A: F.48 Ligands: HV2.9 No protein-ligand interaction detected (PLIP) HV2.9: 4 residues within 4Å: Chain A: E.52, N.55, M.162 Ligands: HV2.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.52 HV2.10: 5 residues within 4Å: Chain A: Q.254, Q.255, R.256, N.258 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.255, A:N.258 HV2.11: 4 residues within 4Å: Chain A: Q.98, R.219, D.228, Y.229 No protein-ligand interaction detected (PLIP) HV2.12: 6 residues within 4Å: Chain A: Y.96, T.100, T.101, L.102, D.103, S.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.96, A:S.106 HV2.13: 3 residues within 4Å: Chain A: T.104, N.223, D.266 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.104, A:T.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, E.P. et al., XChem group deposition. To Be Published

Release Date

2021-06-23

Peptides

Activin receptor type-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Activin receptor type-1

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