SMTL ID : 5tcc.3 (6 other biounits)

Complement Factor D inhibited with JH4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.37 Å

Oligo State

monomer

Ligands

2 x J56: (2S)-N-(6-bromopyridin-2-yl)-3-[(1H-indazol-1-yl)acetyl]-1,3-thiazolidine-2-carboxamide(Non-covalent)

J56.1: 17 residues within 4Å: Chain A: H.24, L.25, C.26, H.41, C.42, W.128, G.129, I.130, K.180, G.181, S.183, T.198, S.199, G.200, S.201, R.202, C.204 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:K.180, A:K.180, A:R.202 Hydrogen bonds: A:L.25, A:G.181, A:S.183 Halogen bonds: A:W.128 J56.2: 10 residues within 4Å: Chain A: G.3, R.5, G.120, L.122, H.143, V.144, L.145, P.147, E.172, R.176 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.122 Hydrogen bonds: A:L.145, A:L.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, C.Y. et al., Buried Hydrogen Bond Interactions Contribute to the High Potency of Complement Factor D Inhibitors. ACS Med Chem Lett (2016)

Release Date

2016-10-19

Peptides

Complement factor D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Complement factor D

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