SMTL ID : 5u49.1

Wild-type Transthyretin in complex with 5-[(1E)-2-(2-Chloro-4-hydroxyphenyl)ethenyl]-1,3-benzenediol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

homo-tetramer

Ligands

4 x S2L: 5-[(E)-2-(2-chloro-4-hydroxyphenyl)ethenyl]benzene-1,3-diol(Non-covalent)

S2L.1: 11 residues within 4Å: Chain A: K.16, L.18, L.111, S.118 Chain C: K.16, L.18, A.109, A.110, L.111, S.118 Ligands: S2L.3 12 PLIP interactions: 7 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:K.16, C:L.18, C:A.109, C:L.111, A:L.18, A:L.111 Hydrogen bonds: C:K.16, C:K.16, C:S.118, A:K.16, A:K.16, A:S.118 S2L.2: 11 residues within 4Å: Chain B: K.16, L.18, L.111, S.118 Chain D: K.16, L.18, A.109, A.110, L.111, S.118 Ligands: S2L.4 12 PLIP interactions: 5 interactions with chain B, 7 interactions with chain D Hydrophobic interactions: B:L.18, B:L.111, D:K.16, D:L.18, D:A.109, D:L.111 Hydrogen bonds: B:K.16, B:K.16, B:S.118, D:K.16, D:K.16, D:S.118 S2L.3: 11 residues within 4Å: Chain A: K.16, L.18, A.109, A.110, L.111, S.118 Chain C: K.16, L.18, L.111, S.118 Ligands: S2L.1 12 PLIP interactions: 5 interactions with chain C, 7 interactions with chain A Hydrophobic interactions: C:L.18, C:L.111, A:K.16, A:L.18, A:A.109, A:L.111 Hydrogen bonds: C:K.16, C:K.16, C:S.118, A:K.16, A:K.16, A:S.118 S2L.4: 11 residues within 4Å: Chain B: K.16, L.18, A.109, A.110, L.111, S.118 Chain D: K.16, L.18, L.111, S.118 Ligands: S2L.2 12 PLIP interactions: 7 interactions with chain B, 5 interactions with chain D Hydrophobic interactions: B:K.16, B:L.18, B:A.109, B:L.111, D:L.18, D:L.111 Hydrogen bonds: B:K.16, B:K.16, B:S.118, D:K.16, D:K.16, D:S.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, T.P. et al., Stilbene Boronic Acids Form a Covalent Bond with Human Transthyretin and Inhibit Its Aggregation. J. Med. Chem. (2017)

Release Date

2017-09-27

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Transthyretin

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