SMTL ID : 6u0q.1

Transthyretin in complex with (E)-5,5'-(ethene-1,2-diyl)bis(1,1-dihydroxy-3-oxo-1,3-dihydrobenzo[c][1,2]oxaborol-1-uide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

4 x S2B: 3-[(~{E})-2-[7,7-bis(oxidanyl)-9-oxidanylidene-8-oxa-7-boranuidabicyclo[4.3.0]nona-1,3,5-trien-3-yl]ethenyl]-7,7-bis(oxidanyl)-8-oxa-7-boranuidabicyclo[4.3.0]nona-1(6),2,4-trien-9-one(Covalent)

S2B.1: 15 residues within 4Å: Chain A: K.16, L.18, E.55, A.109, L.111, S.118, T.119, T.120 Chain C: K.16, L.18, E.55, T.107, L.111, S.118 Ligands: S2B.3 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:L.18, A:L.111, A:T.120, C:L.18 Hydrogen bonds: A:K.16, C:K.16, C:K.16 Salt bridges: A:K.16 pi-Cation interactions: A:K.16 S2B.2: 13 residues within 4Å: Chain B: K.16, L.18, E.55, A.109, L.111, S.118, T.120 Chain D: K.16, L.18, E.55, L.111, S.118 Ligands: S2B.4 11 PLIP interactions: 6 interactions with chain B, 5 interactions with chain D Hydrophobic interactions: B:K.16, B:L.111, B:T.120, D:L.18 Hydrogen bonds: B:K.16, B:E.55, D:K.16, D:E.55 Salt bridges: B:K.16, D:K.16 pi-Cation interactions: D:K.16 S2B.3: 15 residues within 4Å: Chain A: K.16, L.18, E.55, T.107, L.111, S.118 Chain C: K.16, L.18, E.55, A.109, L.111, S.118, T.119, T.120 Ligands: S2B.1 9 PLIP interactions: 3 interactions with chain A, 6 interactions with chain C Hydrophobic interactions: A:L.18, C:L.18, C:L.111, C:T.120 Hydrogen bonds: A:K.16, A:K.16, C:K.16 Salt bridges: C:K.16 pi-Cation interactions: C:K.16 S2B.4: 13 residues within 4Å: Chain B: K.16, L.18, E.55, L.111, S.118 Chain D: K.16, L.18, E.55, A.109, L.111, S.118, T.120 Ligands: S2B.2 11 PLIP interactions: 5 interactions with chain B, 6 interactions with chain D Hydrophobic interactions: B:L.18, D:K.16, D:L.111, D:T.120 Hydrogen bonds: B:K.16, B:E.55, D:K.16, D:E.55 Salt bridges: B:K.16, D:K.16 pi-Cation interactions: B:K.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Graham, B.J. et al., Boronic acid with high oxidative stability and utility in biological contexts. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-01-27

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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