SMTL ID : 5un8.1 (1 other biounit)

Crystal Structure of human O-GlcNAcase in complex with glycopeptide p53

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 15 residues within 4Å: Chain A: G.9, F.10, Y.11, K.40, D.116, N.117, Y.161, V.196, W.220, N.222, A.225, D.227, Y.228, N.255 Chain C: S.6 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:D.116, A:Y.161, A:W.220 Hydrogen bonds: A:G.9, A:K.40, A:K.40, A:D.116, A:N.117, A:N.222, A:N.255 Water bridges: C:S.6 NAG.2: 16 residues within 4Å: Chain B: G.9, F.10, Y.11, K.40, D.116, N.117, C.157, Y.161, T.192, V.196, W.220, N.222, D.227, Y.228, N.255 Chain D: S.6 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.161, B:T.192, B:W.220 Hydrogen bonds: B:G.9, B:K.40, B:K.40, B:D.116, B:N.117, B:N.222, B:N.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, B. et al., Structures of human O-GlcNAcase and its complexes reveal a new substrate recognition mode. Nat. Struct. Mol. Biol. (2017)

Release Date

2017-03-15

Peptides

Protein O-GlcNAcase: AB
P53 peptide: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
G

Protein O-GlcNAcase

P53 peptide

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