SMTL ID : 5vvx.1

Structural Investigations of the Substrate Specificity of Human O-GlcNAcase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 15 residues within 4Å: Chain A: G.9, F.10, Y.11, K.40, D.116, N.117, Y.161, T.192, V.196, W.220, N.222, D.227, Y.228, N.255 Chain C: T.11 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.161, A:T.192, A:W.220 Hydrogen bonds: A:G.9, A:K.40, A:K.40, A:D.116, A:N.117, A:N.222, A:D.227, A:N.255 NAG.2: 15 residues within 4Å: Chain B: G.9, F.10, K.40, D.116, N.117, Y.161, V.196, W.220, N.222, A.225, D.227, Y.228, N.255 Chain D: V.10, T.11 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:D.116, B:Y.161 Hydrogen bonds: B:G.9, B:K.40, B:K.40, B:D.116, B:N.117, B:Y.161, B:N.222, B:D.227, B:N.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, B. et al., Structural insights into the substrate binding adaptability and specificity of human O-GlcNAcase. Nat Commun (2017)

Release Date

2017-09-27

Peptides

Protein O-GlcNAcase: AB
Lamin B1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

Protein O-GlcNAcase

Lamin B1

Related Entries With Identical Sequence