SMTL ID : 5vvv.1

Structural Investigations of the Substrate Specificity of Human O-GlcNAcase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 14 residues within 4Å: Chain A: G.9, F.10, Y.11, K.40, D.116, N.117, Y.161, V.196, W.220, N.222, D.227, Y.228, N.255 Chain B: S.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.220 Hydrogen bonds: A:G.9, A:K.40, A:K.40, A:D.116, A:N.117, A:N.222, A:D.227, A:N.255 NAG.2: 14 residues within 4Å: Chain C: G.9, F.10, Y.11, K.40, D.116, N.117, Y.161, V.196, W.220, N.222, D.227, Y.228, N.255 Chain D: S.4 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:D.116, C:Y.161, C:W.220 Hydrogen bonds: C:G.9, C:K.40, C:K.40, C:D.116, C:N.117, C:N.222, C:D.227, C:N.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, B. et al., Structural insights into the substrate binding adaptability and specificity of human O-GlcNAcase. Nat Commun (2017)

Release Date

2017-09-27

Peptides

Protein O-GlcNAcase: AC
a-crystallin B: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Protein O-GlcNAcase

a-crystallin B

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