SMTL ID : 5ux9.1 (1 other biounit)

The crystal structure of chloramphenicol acetyltransferase from Vibrio fischeri ES114

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-trimer

Ligands

4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 9 residues within 4Å: Chain A: F.101, P.102, F.103, S.104, E.107, F.108 Chain B: G.13, Y.30, Y.32 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.104, A:S.104, A:S.104, A:S.104 MES.6: 10 residues within 4Å: Chain B: F.101, P.102, F.103, S.104, E.107, F.108 Chain C: L.11, G.13, Y.30, Y.32 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.104, B:S.104 MES.12: 9 residues within 4Å: Chain A: L.11, E.12, G.13, Y.32 Chain C: F.101, P.102, F.103, S.104, F.108 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain C pi-Cation interactions: A:Y.32 Hydrogen bonds: C:P.102, C:S.104, C:S.104 MES.13: 7 residues within 4Å: Chain A: W.10 Chain C: L.51, F.65, V.68, A.88, D.114, F.116 No protein-ligand interaction detected (PLIP)

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: H.207, E.210 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.207, A:E.210, H2O.1, H2O.1 MG.7: 2 residues within 4Å: Chain B: H.207, E.210 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.207, B:E.210, B:E.210, H2O.2 MG.14: 2 residues within 4Å: Chain C: H.207, E.210 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.207, C:E.210, C:E.210, H2O.2, H2O.3

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 6 residues within 4Å: Chain A: D.29, Y.30, K.75, W.189, W.191, I.196 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.30 Salt bridges: A:K.75 ACT.4: 3 residues within 4Å: Chain A: L.51, F.65, F.116 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.51 ACT.8: 5 residues within 4Å: Chain B: L.51, F.65, A.88, F.116 Chain C: L.11 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.51, B:A.88, B:F.116 ACT.15: 5 residues within 4Å: Chain C: D.29, Y.30, W.189, W.191, I.196 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:D.29, C:Y.30 Hydrogen bonds: C:D.29 Salt bridges: C:K.75 ACT.16: 2 residues within 4Å: Chain C: E.67, K.70 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:K.70

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: Q.91, H.93 Chain B: Y.32 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: K.75, W.189, W.191 Ligand excluded by PLIP CL.10: 1 residues within 4Å: Chain B: D.114 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain B: Q.91, H.93 Chain C: Y.32 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Chain A: Y.32 Chain C: H.93 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of chloramphenicol acetyltransferase from Vibrio fischeri ES114. To Be Published

Release Date

2017-03-08

Peptides

Chloramphenicol acetyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Chloramphenicol acetyltransferase

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