SMTL ID : 5v7y.1 (2 other biounits)

Prolyl 4-Hydroxylase Interacts with and Modifies Elongation Factor Tu

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.128, D.130, H.194 Ligands: IMD.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.128, A:D.130, A:H.194 CO.4: 4 residues within 4Å: Chain B: H.128, D.130, H.194 Ligands: AKG.5 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.128, B:D.130, B:D.130, B:H.194

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 10 residues within 4Å: Chain A: Y.125, H.128, D.130, V.148, H.194, I.206, T.208, W.210 Ligands: CO.1, TFA.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.208, A:T.208 pi-Stacking: A:W.210

1 x TFA: trifluoroacetic acid(Non-covalent)

TFA.3: 10 residues within 4Å: Chain A: Y.119, Y.125, V.148, T.160, H.194, G.195, G.196, K.204, I.206 Ligands: IMD.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.160 Salt bridges: A:K.204

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.5: 12 residues within 4Å: Chain B: Y.119, Y.125, H.128, D.130, T.160, H.194, G.196, K.204, I.206, T.208, W.210 Ligands: CO.4 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.206 Hydrogen bonds: B:Y.119, B:T.208 Water bridges: B:K.204 Salt bridges: B:H.128, B:K.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schnicker, N.J. et al., Bacillus anthracis Prolyl 4-Hydroxylase Interacts with and Modifies Elongation Factor Tu. Biochemistry (2017)

Release Date

2017-10-18

Peptides

2OG-Fe(II) oxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2OG-Fe(II) oxygenase

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