SMTL ID : 5v7y.2 (2 other biounits)

Prolyl 4-Hydroxylase Interacts with and Modifies Elongation Factor Tu

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.128, D.130, H.194 Ligands: IMD.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.128, A:D.130, A:D.130, A:H.194 CO.7: 4 residues within 4Å: Chain B: H.128, D.130, H.194 Ligands: IMD.8 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.128, B:D.130, B:D.130, B:H.194

4 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 9 residues within 4Å: Chain A: Y.125, H.128, D.130, V.148, H.194, T.208, W.210 Ligands: CO.1, TFA.5 No protein-ligand interaction detected (PLIP) IMD.3: 1 residues within 4Å: Chain A: N.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.105 IMD.4: 3 residues within 4Å: Chain A: Y.129, Y.131, F.132 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.81 IMD.8: 9 residues within 4Å: Chain B: Y.125, H.128, D.130, V.148, H.194, T.208, W.210 Ligands: CO.7, TFA.9 No protein-ligand interaction detected (PLIP)

2 x TFA: trifluoroacetic acid(Non-covalent)

TFA.5: 10 residues within 4Å: Chain A: Y.119, Y.125, V.148, T.160, H.194, G.195, G.196, K.204, I.206 Ligands: IMD.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.119, A:Y.119 Water bridges: A:K.204 Salt bridges: A:K.204 TFA.9: 10 residues within 4Å: Chain B: Y.119, Y.125, V.148, T.160, H.194, G.195, G.196, K.204, I.206 Ligands: IMD.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.160 Salt bridges: B:K.204

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.6: 3 residues within 4Å: Chain A: H.110, I.144, R.213 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.144 Hydrogen bonds: A:H.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schnicker, N.J. et al., Bacillus anthracis Prolyl 4-Hydroxylase Interacts with and Modifies Elongation Factor Tu. Biochemistry (2017)

Release Date

2017-10-18

Peptides

2OG-Fe(II) oxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

2OG-Fe(II) oxygenase

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