SMTL ID : 5vbs.1

Structural basis for a six letter alphabet including GATCKX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x DC- DT- DT- DA- DT- DX- DX- DT: DNA (5'-D(*CP*TP*TP*AP*TP*(DX)P*(DX)P*T)-3')(Non-covalent)

DC-DT-DT-DA-DT-DX-DX-DT.1: 13 residues within 4Å: Chain A: Y.45, L.80, P.81, R.97, K.101 Ligands: DA-93D-93D-DA-DT-DA-DA-DG.2, DA-93D-93D-DA-DT-DA-DA-DG.2, DA-93D-93D-DA-DT-DA-DA-DG.2, DA-93D-93D-DA-DT-DA-DA-DG.2, DA-93D-93D-DA-DT-DA-DA-DG.2, DA-93D-93D-DA-DT-DA-DA-DG.2, DA-93D-93D-DA-DT-DA-DA-DG.2, DA-93D-93D-DA-DT-DA-DA-DG.2 No protein-ligand interaction detected (PLIP)

1 x DA- 93D- 93D- DA- DT- DA- DA- DG: DNA (5'-D(P*AP*(93D)P*(93D)P*AP*TP*AP*AP*G)-3')(Non-covalent)

DA-93D-93D-DA-DT-DA-DA-DG.2: 14 residues within 4Å: Chain A: L.80, Q.94, D.95, L.96, R.97, G.172 Ligands: DC-DT-DT-DA-DT-DX-DX-DT.1, DC-DT-DT-DA-DT-DX-DX-DT.1, DC-DT-DT-DA-DT-DX-DX-DT.1, DC-DT-DT-DA-DT-DX-DX-DT.1, DC-DT-DT-DA-DT-DX-DX-DT.1, DC-DT-DT-DA-DT-DX-DX-DT.1, DC-DT-DT-DA-DT-DX-DX-DT.1, DC-DT-DT-DA-DT-DX-DX-DT.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, I. et al., Structure and Biophysics for a Six Letter DNA Alphabet that Includes Imidazo[1,2-a]-1,3,5-triazine-2(8H)-4(3H)-dione (X) and 2,4-Diaminopyrimidine (K). ACS Synth Biol (2017)

Release Date

2018-03-07

Peptides

reverse transcriptase catalytic fragment: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

reverse transcriptase catalytic fragment

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