SMTL ID : 5vc5.1

Crystal structure of human WEE1 kinase domain in complex with PD-166285

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x 96M: 6-(2,6-dichlorophenyl)-2-({4-[2-(diethylamino)ethoxy]phenyl}amino)-8-methylpyrido[2,3-d]pyrimidin-7(8H)-one(Non-covalent)

96M.1: 22 residues within 4Å: Chain A: E.17, K.18, I.19, G.20, V.27, A.40, I.41, K.42, E.60, V.74, Y.76, I.88, N.90, E.91, Y.92, C.93, N.94, G.96, D.100, F.147, G.176, D.177 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.19, A:I.19, A:A.40, A:K.42, A:I.88, A:N.90, A:Y.92, A:F.147 Hydrogen bonds: A:C.93, A:C.93 Halogen bonds: A:A.40

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 11 residues within 4Å: Chain A: A.63, H.64, L.67, G.68, Q.69, H.70, V.73, V.74, R.75, Y.76, L.178 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.64, A:Y.76 Water bridges: A:V.74

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: S.273, M.275 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.43, H.85 Ligand excluded by PLIP

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 7 residues within 4Å: Chain A: F.13, K.32, D.35, Y.39, F.77, S.78, Q.89 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.32, A:Q.89, A:Q.89 Water bridges: A:D.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J.Y. et al., Structural Basis of Wee Kinases Functionality and Inactivation by Diverse Small Molecule Inhibitors. J. Med. Chem. (2017)

Release Date

2017-08-23

Peptides

Wee1-like protein kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Wee1-like protein kinase

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