SMTL ID : 5vd8.1

Crystal structure of human WEE1 kinase domain in complex with RAC-IV-099, a MK1775 analogue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x 98M: 6-{[3-chloro-4-(4-methylpiperazin-1-yl)phenyl]amino}-1-[6-(2-hydroxypropan-2-yl)pyridin-2-yl]-2-(prop-2-en-1-yl)-1,2-dihydro-3H-pyrazolo[3,4-d]pyrimidin-3-one(Non-covalent)

98M.1: 22 residues within 4Å: Chain A: E.17, I.19, G.20, F.24, V.27, A.40, I.41, K.42, V.74, I.88, N.90, E.91, Y.92, C.93, N.94, G.96, S.97, D.100, S.144, N.145, F.147, D.177 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.19, A:I.19, A:F.24, A:F.24, A:V.27, A:V.27, A:A.40, A:K.42, A:Y.92, A:F.147 Hydrogen bonds: A:N.90, A:C.93, A:C.93, A:N.145 Salt bridges: A:D.100

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: H.208, P.210, K.211 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 10 residues within 4Å: Chain A: H.64, L.67, G.68, Q.69, H.70, V.73, V.74, R.75, Y.76, L.178 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.76 Water bridges: A:G.68, A:G.68 EDO.4: 3 residues within 4Å: Chain A: R.195, P.229, R.232 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J.-Y. et al., Structural basis of Wee family kinase inhibition by small molecules. to be published

Release Date

2018-04-04

Peptides

Wee1-like protein kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Wee1-like protein kinase

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