SMTL ID : 5vd4.1

CRYSTAL STRUCTURE OF HUMAN WEE1 KINASE DOMAIN IN COMPLEX WITH RAC-IV-016, a MK1775 analougue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x 99J: 6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-(prop-2-en-1-yl)-1-{6-[(1S)-2,2,2-trifluoro-1-hydroxyethyl]pyridin-2-yl}-1,2-dihydro-3H-pyrazolo[3,4-d]pyrimidin-3-one(Non-covalent)

99J.1: 20 residues within 4Å: Chain A: E.17, I.19, G.20, S.21, F.24, V.27, A.40, I.41, K.42, V.74, I.88, N.90, E.91, Y.92, C.93, N.94, G.96, D.100, F.147, D.177 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.19, A:I.19, A:V.27, A:V.27, A:V.27, A:A.40, A:K.42, A:Y.92, A:F.147 Hydrogen bonds: A:N.90, A:C.93, A:C.93 Salt bridges: A:D.100 Halogen bonds: A:K.42

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: P.272, S.273, A.276 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.273, A:S.273 Water bridges: A:K.211 Salt bridges: A:K.211 PO4.3: 3 residues within 4Å: Chain A: N.233, G.234, H.238 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.234 Salt bridges: A:H.238

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: A.99, K.142, P.143, S.144, R.195, F.196 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.144 EDO.5: 5 residues within 4Å: Chain A: H.70, S.71, H.72, R.126, R.129 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.70, A:R.129, A:R.129 Water bridges: A:S.71, A:R.126 EDO.6: 7 residues within 4Å: Chain A: Q.236, E.239, I.240, R.244, L.245, P.246, R.247 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.244, A:R.244, A:R.247

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 2 residues within 4Å: Chain A: R.195, R.232 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J.-Y. et al., Structural basis of Wee family kinase inhibition by small molecules. to be published

Release Date

2018-04-04

Peptides

Wee1-like protein kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Wee1-like protein kinase

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