SMTL ID : 5vcn.1 (1 other biounit)

THE CRYSTAL STRUCTURE OF DER P 1 ALLERGEN COMPLEXED WITH FAB FRAGMENT OF MAB 5H8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: R.26, E.44, D.56, L.57, E.59, E.91 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.56, A:L.57, A:E.59, A:E.91

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: G.155, R.156, I.158, Y.203 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.156

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: T.1, Q.118 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.1

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.52 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osinski, T. et al., Structural Analysis of Der p 1-Antibody Complexes and Comparison with Complexes of Proteins or Peptides with Monoclonal Antibodies. J. Immunol. (2015)

Release Date

2017-04-26

Peptides

PEPTIDASE 1: A
LIGHT CHAIN OF FAB FRAGMENT OF MAB 5H8: B
HEAVY CHAIN OF FAB FRAGMENT OF MAB 5H8: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
F

PEPTIDASE 1

LIGHT CHAIN OF FAB FRAGMENT OF MAB 5H8

HEAVY CHAIN OF FAB FRAGMENT OF MAB 5H8

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