SMTL ID : 5vpg.1

CRYSTAL STRUCTURE OF DER P 1 COMPLEXED WITH FAB 4C1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.56, L.57, E.59, E.91 Ligands: EDO.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:L.57, A:E.59, A:E.91, H2O.2

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: R.26, M.27, F.37, D.56, E.59, E.91 Ligands: CA.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.27, A:M.27 Water bridges: A:R.26, A:R.26 EDO.3: 3 residues within 4Å: Chain A: T.21, A.49, H.135 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.135 EDO.4: 5 residues within 4Å: Chain A: T.1, N.2, A.3, Q.118, Y.120 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.118 EDO.5: 4 residues within 4Å: Chain A: K.145, G.164, Y.165, Q.166 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.145, A:Y.165, A:Q.166 EDO.6: 6 residues within 4Å: Chain A: T.23, P.24, R.26, S.54, L.55, D.56 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.26, A:R.26 EDO.8: 6 residues within 4Å: Chain B: Q.37, K.39, K.45, F.62, E.81, D.82 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.37, B:K.39, B:K.45, B:K.45, B:R.61, B:D.82 EDO.9: 6 residues within 4Å: Chain A: N.199 Chain B: Y.91, D.92, F.94, Y.96 Ligands: EDO.10 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Y.91, B:Y.96, A:N.199 Water bridges: A:D.198, A:N.199 EDO.10: 6 residues within 4Å: Chain B: Y.91, Y.96 Chain C: G.100, V.101, Y.102 Ligands: EDO.9 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:Y.91, B:Y.96, C:G.100 Water bridges: C:G.100

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 1 residues within 4Å: Chain A: N.52 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chruszcz, M. et al., Molecular Determinants For Antibody Binding On Group 1 House Dust Mite Allergens. J.Biol.Chem. (2012)

Release Date

2017-05-24

Peptides

Der p 1 allergen: A
FAB 4C1 - LIGHT CHAIN: B
FAB 4C1 - HEAVY CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

Der p 1 allergen

FAB 4C1 - LIGHT CHAIN

FAB 4C1 - HEAVY CHAIN

Related Entries With Identical Sequence