SMTL ID : 5vja.1

Crystal Structure of human zipper-interacting protein kinase (ZIPK, alias DAPK3) in complex with a pyrazolo[3,4-d]pyrimidinone ligand (HS38)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

homo-tetramer

Ligands

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 5 residues within 4Å: Chain A: I.171, F.172, G.173, P.175, L.220 No protein-ligand interaction detected (PLIP) DMS.3: 4 residues within 4Å: Chain B: I.171, F.172, G.173, P.175 No protein-ligand interaction detected (PLIP) DMS.5: 5 residues within 4Å: Chain C: I.171, F.172, G.173, P.175, V.178 No protein-ligand interaction detected (PLIP) DMS.8: 5 residues within 4Å: Chain D: I.171, F.172, G.173, P.175, V.178 No protein-ligand interaction detected (PLIP)

4 x DUK: (2R)-2-{[1-(3-chlorophenyl)-4-oxo-4,5-dihydro-1H-pyrazolo[3,4-d]pyrimidin-6-yl]sulfanyl}propanamide(Non-covalent)

DUK.2: 12 residues within 4Å: Chain A: L.13, G.14, S.15, G.16, V.21, K.36, I.71, L.87, V.90, M.140, I.154, D.155 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.13, A:V.90, A:I.154 Hydrogen bonds: A:K.36, A:D.155, A:D.155, A:D.155 Water bridges: A:K.36, A:F.156 DUK.4: 11 residues within 4Å: Chain B: L.13, G.14, S.15, G.16, V.21, K.36, L.87, V.90, M.140, I.154, D.155 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.13, B:V.90, B:I.154 Hydrogen bonds: B:K.36, B:D.155, B:D.155 Water bridges: B:K.36, B:K.36 DUK.6: 11 residues within 4Å: Chain C: L.13, G.16, A.19, V.21, K.36, L.87, V.90, N.138, M.140, I.154, D.155 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:L.13, C:A.19, C:I.154 Hydrogen bonds: C:K.36, C:D.155, C:D.155 Water bridges: C:F.156, C:F.156 DUK.9: 11 residues within 4Å: Chain D: L.13, G.16, A.19, V.21, K.36, L.87, V.90, N.138, M.140, I.154, D.155 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:L.13, D:A.19, D:I.154 Hydrogen bonds: D:K.36, D:D.155, D:D.155, D:D.155 Water bridges: D:K.36, D:F.156

1 x ILE: ISOLEUCINE(Non-covalent)

ILE.7: 4 residues within 4Å: Chain D: Q.112, I.269, K.270, A.271 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:I.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carlson, D.A. et al., Targeting Pim Kinases and DAPK3 to Control Hypertension. Cell Chem Biol (2018)

Release Date

2018-08-08

Peptides

Death-associated protein kinase 3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Death-associated protein kinase 3

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