SMTL ID : 5vkf.1

RHCC in complex with Naphthalene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-tetramer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain B: R.36 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.36 SO4.2: 2 residues within 4Å: Chain B: S.25, N.28 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.25, B:N.28 Water bridges: B:L.29 SO4.4: 3 residues within 4Å: Chain D: E.24, S.25, N.28 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.24, D:N.28

2 x NPY: NAPHTHALENE(Non-covalent)

NPY.3: 16 residues within 4Å: Chain A: I.30, R.33, A.34, L.37 Chain B: I.30, R.33, A.34, L.37 Chain C: I.30, R.33, A.34, L.37 Chain D: I.30, R.33, A.34, L.37 6 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 1 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: B:A.34, A:R.33, A:A.34, D:A.34, C:R.33, C:A.34 NPY.5: 16 residues within 4Å: Chain A: I.19, R.22, Y.23, L.26 Chain B: I.19, R.22, Y.23, L.26 Chain C: I.19, R.22, Y.23, L.26 Chain D: I.19, R.22, Y.23, L.26 5 PLIP interactions: 2 interactions with chain D, 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: D:R.22, D:Y.23, B:R.22, B:Y.23, A:R.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McDougall, M. et al., Proteinaceous Nano container Encapsulate Polycyclic Aromatic Hydrocarbons. Sci Rep (2019)

Release Date

2018-04-25

Peptides

Tetrabrachion: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Tetrabrachion

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