SMTL ID : 5vp8.1 (1 other biounit)

I38T mutant of 2009 H1N1 PA Endonuclease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.61, D.109, E.120, I.121 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.61, A:D.109, A:E.120, A:I.121, H2O.1, H2O.1 MN.4: 4 residues within 4Å: Chain B: H.61, D.109, E.120, I.121 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.61, B:D.109, B:E.120, B:I.121, H2O.1, H2O.2 MN.7: 4 residues within 4Å: Chain C: H.61, D.109, E.120, I.121 6 PLIP interactions: 4 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.61, C:D.109, C:E.120, C:I.121, H2O.2, H2O.3 MN.10: 4 residues within 4Å: Chain D: H.61, D.109, E.120, I.121 6 PLIP interactions: 4 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.61, D:D.109, D:E.120, D:I.121, H2O.3, H2O.3

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: E.51, T.52, N.53, K.54, S.195 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.51, A:E.51, A:T.52, A:N.53, A:N.53, A:K.54, A:S.195 SO4.5: 5 residues within 4Å: Chain B: E.51, T.52, N.53, K.54, S.195 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:E.51, B:E.51, B:T.52, B:N.53, B:N.53, B:K.54, B:S.195 SO4.8: 5 residues within 4Å: Chain C: E.51, T.52, N.53, K.54, S.195 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:E.51, C:E.51, C:T.52, C:N.53, C:N.53, C:K.54, C:S.195 SO4.11: 5 residues within 4Å: Chain D: E.51, T.52, N.53, K.54, S.195 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:E.51, D:E.51, D:T.52, D:N.53, D:N.53, D:K.54, D:S.195

4 x 9HD: 1-[(3R,5S,7R)-1,5,7,9-tetrakis(2-oxopyrrolidin-1-yl)nonan-3-yl]-1,3-dihydro-2H-pyrrol-2-one(Non-covalent)

9HD.3: 7 residues within 4Å: Chain A: M.32, I.33, F.66, I.79, E.81, G.82, R.83 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.66, A:F.66, A:F.66, A:I.79, A:R.83 9HD.6: 7 residues within 4Å: Chain B: M.32, I.33, F.66, I.79, E.81, G.82, R.83 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.66, B:F.66, B:F.66, B:I.79, B:R.83 9HD.9: 7 residues within 4Å: Chain C: M.32, I.33, F.66, I.79, E.81, G.82, R.83 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:F.66, C:F.66, C:F.66, C:I.79, C:R.83 9HD.12: 7 residues within 4Å: Chain D: M.32, I.33, F.66, I.79, E.81, G.82, R.83 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:F.66, D:F.66, D:F.66, D:I.79, D:R.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jones, J.C. et al., Identification of the I38T PA Substitution as a Resistance Marker for Next-Generation Influenza Virus Endonuclease Inhibitors. MBio (2018)

Release Date

2018-04-11

Peptides

Polymerase acidic protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Polymerase acidic protein

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