- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.87 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x R3J: benzyl [2-(5-hydroxy-4-{[2-(2-methoxypyridin-4-yl)ethyl]carbamoyl}-6-oxo-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate(Non-covalent)
- 16 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 6 residues within 4Å:- Chain A: H.61, E.81, P.108, D.109
- Ligands: R3J.1, MN.3
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.81, A:D.109, H2O.1, H2O.1
MN.3: 6 residues within 4Å:- Chain A: H.61, D.109, E.120, I.121
- Ligands: R3J.1, MN.2
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.61, A:D.109, A:E.120, A:I.121
MN.6: 6 residues within 4Å:- Chain B: H.61, E.81, P.108, D.109
- Ligands: R3J.5, MN.7
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.81, B:D.109, H2O.1, H2O.2
MN.7: 6 residues within 4Å:- Chain B: H.61, D.109, E.120, I.121
- Ligands: R3J.5, MN.6
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.61, B:D.109, B:E.120, B:I.121
MN.10: 6 residues within 4Å:- Chain C: H.61, E.81, P.108, D.109
- Ligands: R3J.9, MN.11
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.81, C:D.109, H2O.2, H2O.2
MN.11: 6 residues within 4Å:- Chain C: H.61, D.109, E.120, I.121
- Ligands: R3J.9, MN.10
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:H.61, C:D.109, C:E.120, C:I.121
MN.14: 6 residues within 4Å:- Chain D: H.61, E.81, P.108, D.109
- Ligands: R3J.13, MN.15
4 PLIP interactions:2 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.81, D:D.109, H2O.3, H2O.3
MN.15: 6 residues within 4Å:- Chain D: H.61, D.109, E.120, I.121
- Ligands: R3J.13, MN.14
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:H.61, D:D.109, D:E.120, D:I.121
MN.18: 6 residues within 4Å:- Chain E: H.61, E.81, P.108, D.109
- Ligands: R3J.17, MN.19
4 PLIP interactions:2 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: E:E.81, E:D.109, H2O.4, H2O.4
MN.19: 6 residues within 4Å:- Chain E: H.61, D.109, E.120, I.121
- Ligands: R3J.17, MN.18
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:H.61, E:D.109, E:E.120, E:I.121
MN.22: 6 residues within 4Å:- Chain F: H.61, E.81, P.108, D.109
- Ligands: R3J.21, MN.23
4 PLIP interactions:2 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:E.81, F:D.109, H2O.5, H2O.5
MN.23: 6 residues within 4Å:- Chain F: H.61, D.109, E.120, I.121
- Ligands: R3J.21, MN.22
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:H.61, F:D.109, F:E.120, F:I.121
MN.26: 6 residues within 4Å:- Chain G: H.61, E.81, P.108, D.109
- Ligands: R3J.25, MN.27
4 PLIP interactions:2 interactions with chain G, 2 Ligand-Water interactions- Metal complexes: G:E.81, G:D.109, H2O.6, H2O.6
MN.27: 6 residues within 4Å:- Chain G: H.61, D.109, E.120, I.121
- Ligands: R3J.25, MN.26
4 PLIP interactions:4 interactions with chain G- Metal complexes: G:H.61, G:D.109, G:E.120, G:I.121
MN.30: 6 residues within 4Å:- Chain H: H.61, E.81, P.108, D.109
- Ligands: R3J.29, MN.31
4 PLIP interactions:2 interactions with chain H, 2 Ligand-Water interactions- Metal complexes: H:E.81, H:D.109, H2O.7, H2O.7
MN.31: 6 residues within 4Å:- Chain H: H.61, D.109, E.120, I.121
- Ligands: R3J.29, MN.30
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:H.61, H:D.109, H:E.120, H:I.121
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 4 residues within 4Å:- Chain A: W.89, N.93, K.103
- Chain E: R.17
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain E- Hydrogen bonds: A:N.93, E:R.17
- Salt bridges: A:K.103
SO4.8: 4 residues within 4Å:- Chain B: W.89, N.93, K.103
- Chain F: R.17
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain F- Hydrogen bonds: B:N.93, F:R.17
- Salt bridges: B:K.103
SO4.12: 4 residues within 4Å:- Chain C: W.89, N.93, K.103
- Chain H: R.17
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain H- Hydrogen bonds: C:N.93, H:R.17
- Salt bridges: C:K.103
SO4.16: 4 residues within 4Å:- Chain D: W.89, N.93, K.103
- Chain G: R.17
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain G- Hydrogen bonds: D:N.93, G:R.17
- Salt bridges: D:K.103
SO4.20: 4 residues within 4Å:- Chain A: R.17
- Chain E: W.89, N.93, K.103
3 PLIP interactions:2 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: E:N.93, A:R.17
- Salt bridges: E:K.103
SO4.24: 4 residues within 4Å:- Chain B: R.17
- Chain F: W.89, N.93, K.103
3 PLIP interactions:2 interactions with chain F, 1 interactions with chain B- Hydrogen bonds: F:N.93, B:R.17
- Salt bridges: F:K.103
SO4.28: 4 residues within 4Å:- Chain D: R.17
- Chain G: W.89, N.93, K.103
3 PLIP interactions:2 interactions with chain G, 1 interactions with chain D- Hydrogen bonds: G:N.93, D:R.17
- Salt bridges: G:K.103
SO4.32: 4 residues within 4Å:- Chain C: R.17
- Chain H: W.89, N.93, K.103
3 PLIP interactions:2 interactions with chain H, 1 interactions with chain C- Hydrogen bonds: H:N.93, C:R.17
- Salt bridges: H:K.103
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cuypers, M.G. et al., The crystal structure of the 2009 H1N1 PA endonuclease mutant I38T in complex with SJ000986213. To Be Published
- Release Date
- 2021-02-24
- Peptides
- Polymerase acidic protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.87 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x R3J: benzyl [2-(5-hydroxy-4-{[2-(2-methoxypyridin-4-yl)ethyl]carbamoyl}-6-oxo-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate(Non-covalent)
- 16 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Cuypers, M.G. et al., The crystal structure of the 2009 H1N1 PA endonuclease mutant I38T in complex with SJ000986213. To Be Published
- Release Date
- 2021-02-24
- Peptides
- Polymerase acidic protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A