- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.38 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x RLT: N-(4-fluorobenzyl)-5-hydroxy-1-methyl-2-(1-methyl-1-{[(5-methyl-1,3,4-oxadiazol-2-yl)carbonyl]amino}ethyl)-6-oxo-1,6-di hydropyrimidine-4-carboxamide(Non-covalent)
- 8 x QQ4: Hexa Vinylpyrrolidone K15(Non-covalent)
QQ4.2: 5 residues within 4Å:- Chain A: M.32, F.66, I.79, E.81, G.82
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.66, A:F.66, A:F.66
- Water bridges: A:R.83
QQ4.7: 5 residues within 4Å:- Chain B: M.32, F.66, I.79, E.81, G.82
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.66, B:F.66, B:F.66
- Water bridges: B:R.83
QQ4.12: 5 residues within 4Å:- Chain C: M.32, F.66, I.79, E.81, G.82
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:F.66, C:F.66, C:F.66
- Water bridges: C:R.83
QQ4.17: 5 residues within 4Å:- Chain D: M.32, F.66, I.79, E.81, G.82
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:F.66, D:F.66, D:F.66
- Water bridges: D:R.83
QQ4.22: 5 residues within 4Å:- Chain E: M.32, F.66, I.79, E.81, G.82
4 PLIP interactions:4 interactions with chain E- Hydrophobic interactions: E:F.66, E:F.66, E:F.66
- Water bridges: E:R.83
QQ4.27: 5 residues within 4Å:- Chain F: M.32, F.66, I.79, E.81, G.82
4 PLIP interactions:4 interactions with chain F- Hydrophobic interactions: F:F.66, F:F.66, F:F.66
- Water bridges: F:R.83
QQ4.32: 5 residues within 4Å:- Chain G: M.32, F.66, I.79, E.81, G.82
4 PLIP interactions:4 interactions with chain G- Hydrophobic interactions: G:F.66, G:F.66, G:F.66
- Water bridges: G:R.83
QQ4.37: 5 residues within 4Å:- Chain H: M.32, F.66, I.79, E.81, G.82
4 PLIP interactions:4 interactions with chain H- Hydrophobic interactions: H:F.66, H:F.66, H:F.66
- Water bridges: H:R.83
- 16 x MN: MANGANESE (II) ION(Non-covalent)
MN.3: 5 residues within 4Å:- Chain A: H.61, D.109, E.120, I.121
- Ligands: RLT.1
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.61, A:D.109, A:E.120, A:I.121
MN.4: 5 residues within 4Å:- Chain A: H.61, E.81, P.108, D.109
- Ligands: RLT.1
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.81, A:D.109
MN.8: 5 residues within 4Å:- Chain B: H.61, D.109, E.120, I.121
- Ligands: RLT.6
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.61, B:D.109, B:E.120, B:I.121
MN.9: 5 residues within 4Å:- Chain B: H.61, E.81, P.108, D.109
- Ligands: RLT.6
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.81, B:D.109
MN.13: 5 residues within 4Å:- Chain C: H.61, D.109, E.120, I.121
- Ligands: RLT.11
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:H.61, C:D.109, C:E.120, C:I.121
MN.14: 5 residues within 4Å:- Chain C: H.61, E.81, P.108, D.109
- Ligands: RLT.11
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:E.81, C:D.109
MN.18: 5 residues within 4Å:- Chain D: H.61, D.109, E.120, I.121
- Ligands: RLT.16
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:H.61, D:D.109, D:E.120, D:I.121
MN.19: 5 residues within 4Å:- Chain D: H.61, E.81, P.108, D.109
- Ligands: RLT.16
2 PLIP interactions:2 interactions with chain D- Metal complexes: D:E.81, D:D.109
MN.23: 5 residues within 4Å:- Chain E: H.61, D.109, E.120, I.121
- Ligands: RLT.21
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:H.61, E:D.109, E:E.120, E:I.121
MN.24: 5 residues within 4Å:- Chain E: H.61, E.81, P.108, D.109
- Ligands: RLT.21
2 PLIP interactions:2 interactions with chain E- Metal complexes: E:E.81, E:D.109
MN.28: 5 residues within 4Å:- Chain F: H.61, D.109, E.120, I.121
- Ligands: RLT.26
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:H.61, F:D.109, F:E.120, F:I.121
MN.29: 5 residues within 4Å:- Chain F: H.61, E.81, P.108, D.109
- Ligands: RLT.26
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:E.81, F:D.109
MN.33: 5 residues within 4Å:- Chain G: H.61, D.109, E.120, I.121
- Ligands: RLT.31
4 PLIP interactions:4 interactions with chain G- Metal complexes: G:H.61, G:D.109, G:E.120, G:I.121
MN.34: 5 residues within 4Å:- Chain G: H.61, E.81, P.108, D.109
- Ligands: RLT.31
2 PLIP interactions:2 interactions with chain G- Metal complexes: G:E.81, G:D.109
MN.38: 5 residues within 4Å:- Chain H: H.61, D.109, E.120, I.121
- Ligands: RLT.36
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:H.61, H:D.109, H:E.120, H:I.121
MN.39: 5 residues within 4Å:- Chain H: H.61, E.81, P.108, D.109
- Ligands: RLT.36
2 PLIP interactions:2 interactions with chain H- Metal complexes: H:E.81, H:D.109
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 4 residues within 4Å:- Chain A: G.72, S.73, R.76, K.114
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.73, A:S.73
- Salt bridges: A:R.76, A:K.114
SO4.10: 4 residues within 4Å:- Chain B: G.72, S.73, R.76, K.114
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.73, B:S.73
- Salt bridges: B:R.76, B:K.114
SO4.15: 4 residues within 4Å:- Chain C: G.72, S.73, R.76, K.114
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:S.73, C:S.73
- Salt bridges: C:R.76, C:K.114
SO4.20: 4 residues within 4Å:- Chain D: G.72, S.73, R.76, K.114
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:S.73, D:S.73
- Salt bridges: D:R.76, D:K.114
SO4.25: 4 residues within 4Å:- Chain E: G.72, S.73, R.76, K.114
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:S.73, E:S.73
- Salt bridges: E:R.76, E:K.114
SO4.30: 4 residues within 4Å:- Chain F: G.72, S.73, R.76, K.114
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:S.73, F:S.73
- Salt bridges: F:R.76, F:K.114
SO4.35: 4 residues within 4Å:- Chain G: G.72, S.73, R.76, K.114
4 PLIP interactions:4 interactions with chain G- Hydrogen bonds: G:S.73, G:S.73
- Salt bridges: G:R.76, G:K.114
SO4.40: 4 residues within 4Å:- Chain H: G.72, S.73, R.76, K.114
4 PLIP interactions:4 interactions with chain H- Hydrogen bonds: H:S.73, H:S.73
- Salt bridges: H:R.76, H:K.114
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Slavish, P.J. et al., Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential. Eur.J.Med.Chem. (2023)
- Release Date
- 2021-05-26
- Peptides
- Polymerase acidic protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.38 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x RLT: N-(4-fluorobenzyl)-5-hydroxy-1-methyl-2-(1-methyl-1-{[(5-methyl-1,3,4-oxadiazol-2-yl)carbonyl]amino}ethyl)-6-oxo-1,6-di hydropyrimidine-4-carboxamide(Non-covalent)
- 8 x QQ4: Hexa Vinylpyrrolidone K15(Non-covalent)
- 16 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Slavish, P.J. et al., Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential. Eur.J.Med.Chem. (2023)
- Release Date
- 2021-05-26
- Peptides
- Polymerase acidic protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A