SMTL ID : 5vww.1

Bak core latch dimer in complex with Bim-RT - Tetragonal

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-2-2-mer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 8 residues within 4Å: Chain A: I.69, N.70, Y.73, D.74, F.77, A.114, G.117 Chain C: I.15 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.69, A:Y.73, A:F.77, A:F.77, A:F.77, C:I.15 Hydrogen bonds: A:G.117 Water bridges: A:R.26

2 x BR: BROMIDE ION(Non-covalent)

BR.2: 1 residues within 4Å: Chain A: N.108 Ligand excluded by PLIP BR.4: 2 residues within 4Å: Chain C: P.4, R.7 Ligand excluded by PLIP

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 4 residues within 4Å: Chain A: N.108, W.109 Chain B: W.154 Chain C: N.20 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: A:W.109, C:N.20 pi-Stacking: B:W.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brouwer, J.M. et al., Conversion of Bim-BH3 from Activator to Inhibitor of Bak through Structure-Based Design. Mol. Cell (2017)

Release Date

2017-11-15

Peptides

Bcl-2 homologous antagonist/killer: AB
Bcl-2-like protein 11: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Bcl-2 homologous antagonist/killer

Bcl-2-like protein 11

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