SMTL ID : 5vy8.1

S. cerevisiae Hsp104-ADP complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

12 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)

ADP.1: 16 residues within 4Å: Chain A: D.184, P.185, V.186, I.187, E.213, P.214, G.215, I.216, G.217, K.218, T.219, A.220, I.351, L.355, D.390, L.393 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:P.185, A:I.187, A:E.213, A:G.215, A:G.215, A:I.216, A:G.217, A:K.218, A:T.219, A:A.220 Salt bridges: A:K.218, A:K.218 ADP.2: 16 residues within 4Å: Chain A: E.579, V.580, V.581, S.616, G.617, S.618, G.619, K.620, T.621, E.622, L.775, I.783, I.786, A.825, R.826, N.829 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:V.581, A:G.617, A:S.618, A:G.619, A:T.621, A:E.622, A:N.829, A:N.829 ADP.3: 13 residues within 4Å: Chain B: P.185, V.186, I.187, G.215, I.216, G.217, K.218, T.219, A.220, I.351, L.355, P.389, D.390 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:P.185, B:I.187, B:G.215, B:G.215, B:G.217, B:K.218, B:T.219, B:T.219, B:T.219, B:A.220, B:D.390 ADP.4: 15 residues within 4Å: Chain B: E.579, V.580, V.581, S.616, G.617, S.618, G.619, K.620, T.621, E.622, L.775, I.783, R.787, A.825, R.826 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:V.581, B:V.581, B:G.617, B:S.618, B:G.619, B:K.620, B:T.621, B:T.621, B:T.621, B:E.622, B:E.622, B:R.787, B:R.787 ADP.5: 14 residues within 4Å: Chain C: P.185, V.186, I.187, P.214, G.215, I.216, G.217, K.218, T.219, A.220, I.351, P.389, D.390, L.393 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:I.187, C:G.215, C:I.216, C:G.217, C:K.218, C:T.219, C:T.219 ADP.6: 15 residues within 4Å: Chain C: E.579, V.580, V.581, S.616, G.617, S.618, G.619, K.620, T.621, E.622, L.775, I.783, R.787, A.825, R.826 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:V.581, C:G.617, C:S.618, C:G.619, C:K.620, C:T.621, C:T.621, C:E.622, C:R.787 ADP.7: 14 residues within 4Å: Chain C: R.333, R.334 Chain D: V.186, G.215, G.217, K.218, T.219, A.220, E.285, I.351, L.355, P.389, D.390, L.393 11 PLIP interactions: 9 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:G.215, D:G.217, D:G.217, D:T.219, D:T.219, D:A.220, D:E.285, D:E.285, C:R.333, C:R.334 Salt bridges: D:K.218 ADP.8: 15 residues within 4Å: Chain D: E.579, V.580, V.581, S.616, G.617, S.618, G.619, K.620, T.621, E.622, L.775, I.783, R.787, A.825, R.826 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:V.581, D:G.617, D:S.618, D:G.619, D:K.620, D:T.621, D:E.622, D:R.787, D:R.787 Salt bridges: D:R.826 ADP.9: 12 residues within 4Å: Chain D: R.333 Chain E: P.185, V.186, I.187, P.214, I.216, G.217, K.218, T.219, A.220, I.351, P.389 9 PLIP interactions: 8 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:I.187, E:I.187, E:I.216, E:K.218, E:T.219, E:T.219, E:T.219, E:A.220 Salt bridges: D:R.333 ADP.10: 14 residues within 4Å: Chain E: E.579, V.580, V.581, S.616, G.617, S.618, G.619, T.621, E.622, I.783, I.786, A.825, R.826, N.829 8 PLIP interactions: 7 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:V.581, E:S.616, E:G.617, E:G.619, E:T.621, E:M.823, E:R.826, D:N.764 ADP.11: 12 residues within 4Å: Chain F: V.581, G.617, S.618, G.619, K.620, T.621, E.622, L.775, A.779, I.780, I.783, R.787 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:V.581, F:G.619, F:K.620, F:T.621, F:E.622, F:A.779, F:I.783 ADP.12: 12 residues within 4Å: Chain E: R.333 Chain F: I.187, G.215, I.216, G.217, K.218, T.219, A.220, E.223, I.351, L.355, D.390 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:I.187, F:G.215, F:I.216, F:T.219, F:T.219, F:A.220, F:E.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gates, S.N. et al., Ratchet-like polypeptide translocation mechanism of the AAA+ disaggregase Hsp104. Science (2017)

Release Date

2017-07-05

Peptides

Heat shock protein 104: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Heat shock protein 104

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