SMTL ID : 5vy9.1

S. cerevisiae Hsp104:casein complex, Middle Domain Conformation

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-1-mer

Ligands

12 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 15 residues within 4Å: Chain A: P.185, V.186, I.187, P.214, G.215, I.216, G.217, K.218, T.219, A.220, I.351, L.393 Chain F: G.329, E.332, R.333 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain F Hydrogen bonds: A:I.187, A:I.187, A:G.215, A:G.217, A:K.218, A:T.219, A:T.219, A:E.223, F:R.333 AGS.2: 17 residues within 4Å: Chain A: V.580, V.581, Q.583, S.616, G.617, S.618, G.619, K.620, T.621, E.622, I.780, I.783, R.787, Y.819, M.823, G.824, A.825 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:V.581, A:V.581, A:Q.583, A:G.617, A:G.619, A:K.620, A:T.621, A:T.621, A:R.787, A:Y.819, A:A.825 AGS.3: 19 residues within 4Å: Chain A: R.333, R.334 Chain B: P.185, V.186, I.187, R.189, E.213, P.214, G.215, I.216, G.217, K.218, T.219, A.220, I.351, L.355, P.389, D.390, L.393 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:I.187, B:I.187, B:G.215, B:I.216, B:G.217, B:K.218, B:T.219, B:T.219, B:T.219, B:A.220, B:D.390 Salt bridges: B:K.218 AGS.4: 15 residues within 4Å: Chain B: V.580, V.581, S.616, G.617, S.618, G.619, K.620, T.621, E.622, D.686, L.775, I.783, A.825, R.826, N.829 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:V.581, B:V.581, B:G.617, B:G.619, B:T.621, B:T.621, B:E.622, B:E.622, B:E.622, B:N.829, B:N.829 AGS.5: 19 residues within 4Å: Chain B: I.204, R.333 Chain C: D.184, P.185, V.186, I.187, R.189, P.214, G.215, I.216, G.217, K.218, T.219, A.220, E.285, I.351, L.355, P.389, L.393 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:D.184, C:I.187, C:I.187, C:E.213, C:G.215, C:I.216, C:G.217, C:K.218, C:T.219, C:T.219, C:T.219, C:A.220, C:E.285 Salt bridges: C:K.218 AGS.6: 17 residues within 4Å: Chain B: E.761, R.765 Chain C: E.579, V.580, V.581, S.616, G.617, S.618, G.619, K.620, T.621, E.622, N.728, L.775, I.783, A.825, N.829 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:V.581, C:V.581, C:G.617, C:S.618, C:G.619, C:K.620, C:K.620, C:T.621, C:T.621, C:T.621, C:E.622, C:N.728, C:N.829 Salt bridges: C:K.620 AGS.7: 20 residues within 4Å: Chain C: I.204, R.334 Chain D: D.184, P.185, V.186, I.187, R.189, E.213, P.214, G.215, I.216, G.217, K.218, T.219, A.220, I.351, L.355, P.389, D.390, L.393 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:D.184, D:I.187, D:I.187, D:G.215, D:I.216, D:G.217, D:K.218, D:K.218, D:K.218, D:K.218, D:T.219, D:A.220 Salt bridges: D:K.218 AGS.8: 19 residues within 4Å: Chain C: R.765 Chain D: E.579, V.580, V.581, Q.583, S.616, G.617, S.618, G.619, K.620, T.621, E.622, E.687, T.726, L.775, I.783, R.787, A.825, N.829 14 PLIP interactions: 13 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:V.581, D:V.581, D:Q.583, D:G.617, D:G.619, D:K.620, D:T.621, D:T.621, D:E.622, D:E.622, D:R.787, D:N.829, C:R.765 Salt bridges: D:K.620 AGS.9: 15 residues within 4Å: Chain D: R.334 Chain E: P.185, V.186, I.187, R.189, G.215, I.216, G.217, K.218, T.219, A.220, I.351, L.355, D.390, L.393 11 PLIP interactions: 10 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:I.187, E:I.187, E:G.215, E:I.216, E:G.217, E:K.218, E:K.218, E:T.219, E:A.220, D:R.334 Salt bridges: E:K.218 AGS.10: 21 residues within 4Å: Chain D: R.765 Chain E: E.579, V.580, V.581, S.616, G.617, S.618, G.619, K.620, T.621, E.622, R.640, D.686, T.726, N.728, L.775, I.783, R.787, A.825, R.826, N.829 16 PLIP interactions: 15 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:V.581, E:V.581, E:G.617, E:G.619, E:K.620, E:T.621, E:E.622, E:T.726, E:T.726, E:N.728, E:N.728, E:N.829 Salt bridges: E:K.620, E:R.826, E:R.826, D:R.765 AGS.11: 15 residues within 4Å: Chain E: R.333 Chain F: V.186, I.187, R.189, G.215, I.216, G.217, K.218, T.219, A.220, D.284, I.286, I.351, L.355, D.390 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:I.187, F:I.187, F:G.215, F:I.216, F:G.217, F:K.218, F:T.219, F:T.219, F:A.220, F:D.284, F:D.284 Salt bridges: F:K.218 AGS.12: 17 residues within 4Å: Chain E: R.765 Chain F: E.579, V.580, V.581, S.616, G.617, S.618, G.619, K.620, T.621, E.622, E.687, L.775, I.783, R.787, A.825, R.826 16 PLIP interactions: 16 interactions with chain F Hydrogen bonds: F:V.581, F:V.581, F:S.616, F:G.617, F:S.618, F:G.619, F:K.620, F:K.620, F:T.621, F:E.622, F:E.622, F:E.687, F:R.787, F:R.787 Salt bridges: F:K.620, F:R.826

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gates, S.N. et al., Ratchet-like polypeptide translocation mechanism of the AAA+ disaggregase Hsp104. Science (2017)

Release Date

2017-07-19

Peptides

Heat shock protein 104: ABCDEF
Alpha-S1-casein: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
P

Heat shock protein 104

Alpha-S1-casein

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