SMTL ID : 5w5z.1

Crystal structure of BAXP168G in complex with an activating antibody at high resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Q.37, K.45, P.59, F.62 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.37, A:K.45 Water bridges: A:Q.37, A:R.61 EDO.2: 2 residues within 4Å: Chain A: S.99, G.100 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.9 EDO.3: 5 residues within 4Å: Chain A: Q.38, N.39, L.40, T.85 Ligands: MES.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.38, A:T.85, A:T.85

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 7 residues within 4Å: Chain A: N.30, K.31, T.51, N.52, G.66, S.67, G.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.31, A:T.51 PG4.5: 4 residues within 4Å: Chain A: S.144, V.196, H.197, K.198 No protein-ligand interaction detected (PLIP)

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.6: 3 residues within 4Å: Chain B: Q.196, A.197, K.214 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.214 PGE.7: 5 residues within 4Å: Chain A: K.45, T.56, G.57 Chain B: E.106, Y.107 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.46

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.8: 9 residues within 4Å: Chain A: Q.38, L.40, G.41 Chain B: Q.39, V.93, Q.110, G.111, K.113 Ligands: EDO.3 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:G.111, B:K.113 Hydrogen bonds: A:G.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robin, A.Y. et al., Ensemble Properties of Bax Determine Its Function. Structure (2018)

Release Date

2018-06-27

Peptides

3C10 Fab light chain: A
3C10 Fab heavy chain: B
Apoptosis regulator BAX: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

3C10 Fab light chain

3C10 Fab heavy chain

Apoptosis regulator BAX

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