SMTL ID : 5w7d.1

Murine acyloxyacyl hydrolase (AOAH), S262A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.194, S.196, D.197, Q.213 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: N.453, T.455, L.456, L.459 No protein-ligand interaction detected (PLIP)

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: D.171, D.173, D.175, H.177, D.192, D.195 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.171, A:D.173, A:D.175, A:H.177, A:D.192, A:D.195 CA.4: 9 residues within 4Å: Chain A: D.173, D.175, D.192, N.194, D.195, D.197, K.198, V.200, Y.201 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.173, A:D.175, A:D.192, A:N.194, A:D.197 CA.5: 6 residues within 4Å: Chain A: D.210, D.214, N.216, N.218, I.220, E.232 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.210, A:D.214, A:I.220, A:E.232

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 3 residues within 4Å: Chain A: N.396, G.397, A.481 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.396 Water bridges: A:N.396, A:G.397, A:A.481, A:A.481

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 5 residues within 4Å: Chain A: R.205, P.206, D.207, N.208, W.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.208, A:W.209 Water bridges: A:P.206

1 x PX8: 1,2-DISTEAROYL-SN-GLYCERO-3-PHOSPHATE(Non-covalent)

PX8.8: 38 residues within 4Å: Chain A: Q.26, L.29, G.30, C.31, V.33, L.34, V.35, V.37, L.56, L.60, L.73, F.77, F.100, L.152, D.249, A.250, F.255, I.257, W.261, L.262, M.267, F.272, L.275, L.283, N.327, G.328, N.360, H.420, L.422, F.434, L.438, L.443, P.445, V.513, D.514, F.516, H.517 Ligands: MYR.9 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.34, A:F.100, A:F.255, A:I.257, A:L.262, A:F.434, A:V.513 Hydrogen bonds: A:A.250, A:G.328, A:N.360, A:N.360, A:N.360 Water bridges: A:H.517 Salt bridges: A:H.517, A:H.517

1 x MYR: MYRISTIC ACID(Non-covalent)

MYR.9: 17 residues within 4Å: Chain A: L.34, L.60, L.66, A.69, C.70, L.73, L.152, I.155, I.159, I.163, F.255, L.275, L.279, E.282, L.283, N.327 Ligands: PX8.8 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.66 Hydrogen bonds: A:N.327 Water bridges: A:E.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gorelik, A. et al., Crystal structure of the mammalian lipopolysaccharide detoxifier. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-01-03

Peptides

Acyloxyacyl hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Acyloxyacyl hydrolase

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