SMTL ID : 5w90.1

FEZ-1 metallo-beta-lactamase from Legionella gormanii modelled with unknown ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.71, D.75, H.76, H.215 Ligands: ZN.2, UNL.6 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.75, A:H.76, A:H.215, H2O.1, H2O.10 ZN.2: 5 residues within 4Å: Chain A: H.71, H.73, H.149 Ligands: ZN.1, UNL.6 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.71, A:H.73, A:H.149, H2O.6, H2O.12

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: K.51, K.55, K.60, F.61, S.62 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:F.61, A:S.62 Water bridges: A:K.51, A:K.51, A:S.62 Salt bridges: A:K.51, A:K.55 SO4.4: 1 residues within 4Å: Chain A: R.34 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.34, A:R.34 Salt bridges: A:R.34

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: M.92, K.126, R.133, V.134, E.135 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.126, A:E.135, A:E.135 Water bridges: A:R.133, A:E.135

2 x UNL: UNKNOWN LIGAND

UNL.6: 8 residues within 4Å: Chain A: Y.2, H.73, D.75, H.149, N.178, H.215 Ligands: ZN.1, ZN.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.178 Water bridges: A:S.174 Salt bridges: A:H.73, A:H.149, A:H.215 UNL.7: 3 residues within 4Å: Chain A: M.218, Y.245, K.249 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Y.245, A:K.249 Salt bridges: A:K.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Saez, I. et al., Three-dimensional structure of FEZ-1, a monomeric subclass B3 metallo-beta-lactamase from Fluoribacter gormanii, in native form and in complex with D-captopril. J. Mol. Biol. (2003)

Release Date

2018-06-20

Peptides

FEZ-1 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FEZ-1 protein

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