SMTL ID : 5wck.1 (1 other biounit)

Native FEZ-1 metallo-beta-lactamase from Legionella gormanii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: D.75, H.76, H.215 Ligands: ZN.2, UNX.9, UNX.12, UNX.13 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.75, A:H.76, A:H.215, H2O.7 ZN.2: 7 residues within 4Å: Chain A: H.71, H.73, H.149 Ligands: ZN.1, UNX.9, UNX.10, UNX.13 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.71, A:H.73, A:H.149, H2O.7

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: K.51, K.55, K.60, F.61, S.62 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:F.61, A:S.62 Water bridges: A:K.51, A:K.55, A:S.62 Salt bridges: A:K.51, A:K.55 SO4.4: 2 residues within 4Å: Chain A: R.34, L.136 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.34 SO4.6: 2 residues within 4Å: Chain A: K.165, Y.167 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.167 Salt bridges: A:K.165 SO4.7: 3 residues within 4Å: Chain A: G.131, E.132, R.133 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.133 Water bridges: A:E.132, A:R.133, A:E.135 SO4.8: 3 residues within 4Å: Chain A: M.218, Y.245, K.249 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.245 Water bridges: A:K.249, A:K.249 Salt bridges: A:K.249

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: M.92, K.126, R.133, V.134, E.135 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.126, A:E.135, A:E.135 Water bridges: A:R.133, A:E.135

6 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.9: 8 residues within 4Å: Chain A: D.75, N.178 Ligands: ZN.1, ZN.2, UNX.10, UNX.11, UNX.12, UNX.13 No protein-ligand interaction detected (PLIP) UNX.10: 8 residues within 4Å: Chain A: H.73, H.149, N.178 Ligands: ZN.2, UNX.9, UNX.11, UNX.12, UNX.13 No protein-ligand interaction detected (PLIP) UNX.11: 4 residues within 4Å: Chain A: F.74, D.75 Ligands: UNX.9, UNX.10 No protein-ligand interaction detected (PLIP) UNX.12: 7 residues within 4Å: Chain A: D.75, H.215 Ligands: ZN.1, UNX.9, UNX.10, UNX.13, UNX.14 No protein-ligand interaction detected (PLIP) UNX.13: 10 residues within 4Å: Chain A: H.71, H.76, H.149, H.215 Ligands: ZN.1, ZN.2, UNX.9, UNX.10, UNX.12, UNX.14 No protein-ligand interaction detected (PLIP) UNX.14: 5 residues within 4Å: Chain A: H.149, S.174, M.218 Ligands: UNX.12, UNX.13 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Saez, I. et al., Three-dimensional structure of FEZ-1, a monomeric subclass B3 metallo-beta-lactamase from Fluoribacter gormanii, in native form and in complex with D-captopril. J. Mol. Biol. (2003)

Release Date

2018-06-20

Peptides

FEZ-1 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FEZ-1 protein

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