SMTL ID : 5whw.1

Using sound pulses to solve the crystal harvesting bottleneck

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: P.175, V.177, D.200 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:P.175, A:V.177, A:D.200, A:D.200, H2O.2 CA.2: 2 residues within 4Å: Chain A: T.16, D.260 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.16, A:D.260, H2O.7, H2O.10, H2O.12

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.3: 5 residues within 4Å: Chain A: Y.60, Y.61, K.94, D.97, D.98 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.94, A:K.94, A:D.98 Water bridges: A:Y.61, A:Y.61, A:D.98

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: F.113, S.116, D.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.120 Water bridges: A:D.117, A:D.117 EDO.5: 3 residues within 4Å: Chain A: N.120, R.121, N.122 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.120, A:R.121, A:N.122 Water bridges: A:N.122 EDO.6: 6 residues within 4Å: Chain A: G.32, S.33, C.34, Q.89, N.122, P.124 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.32, A:S.33, A:Q.89

1 x BCN: BICINE(Non-covalent)

BCN.7: 7 residues within 4Å: Chain A: H.69, N.161, I.220, S.221, G.222, T.223, S.224 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.161, A:S.224, A:S.224 Water bridges: A:H.69, A:H.69, A:T.223 Salt bridges: A:H.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samara, Y.N. et al., Using sound pulses to solve the crystal-harvesting bottleneck. Acta Crystallogr D Struct Biol (2018)

Release Date

2017-08-02

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proteinase K

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