- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x AOT: 2-oxidanylidene-2-phenylazanyl-ethanoic acid(Non-covalent)
AOT.2: 9 residues within 4Å:- Chain A: N.105, M.128, T.130, K.187, N.191, N.195, P.259, S.260
- Ligands: NAD.1
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:T.130
- Hydrogen bonds: A:N.105, A:K.187, A:N.191, A:N.195, A:S.260
- Salt bridges: A:K.187
- pi-Cation interactions: A:K.187
AOT.13: 11 residues within 4Å:- Chain B: N.105, M.128, T.130, K.187, V.190, N.191, N.195, I.254, P.259, S.260
- Ligands: NAD.12
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:T.130, B:V.190, B:I.254
- Hydrogen bonds: B:N.105, B:K.187, B:N.191, B:N.195, B:S.260
- Salt bridges: B:K.187
- pi-Cation interactions: B:K.187
- 9 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 9 residues within 4Å:- Chain A: I.107, G.108, E.110, H.181, I.184, Y.185, E.232, K.284
- Ligands: SO4.8
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.108, A:K.284, A:K.284
- Water bridges: A:H.109
GOL.4: 8 residues within 4Å:- Chain A: R.14, T.130, A.131, G.132, K.140, L.141, F.142, H.257
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.14, A:T.130, A:T.130, A:K.140, A:F.142, A:H.257
- Water bridges: A:T.130
GOL.5: 7 residues within 4Å:- Chain A: W.32, L.133, E.134, G.135, N.268, R.270
- Ligands: NAD.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.134, A:R.270
- Water bridges: A:N.268
GOL.6: 5 residues within 4Å:- Chain A: D.275, Y.276, A.280, R.283
- Ligands: GOL.7
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.275, A:R.283
GOL.7: 6 residues within 4Å:- Chain A: D.275, G.279, S.282, R.283, T.299
- Ligands: GOL.6
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.283, A:H.303
GOL.11: 3 residues within 4Å:- Chain A: E.84, Q.88, K.115
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.88, A:K.115
GOL.14: 8 residues within 4Å:- Chain B: I.107, G.108, E.110, H.181, I.184, Y.185, E.232, K.284
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.108, B:E.110, B:K.284, B:K.284
GOL.15: 8 residues within 4Å:- Chain B: R.14, T.130, A.131, G.132, K.140, L.141, F.142, H.257
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.14, B:T.130, B:T.130, B:F.142
- Water bridges: B:H.257
GOL.16: 8 residues within 4Å:- Chain B: W.32, L.133, E.134, G.135, K.267, N.268, R.270
- Ligands: NAD.12
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.134, B:K.267, B:R.270
- Water bridges: B:N.268
- 7 x SO4: SULFATE ION(Non-functional Binders)
SO4.8: 5 residues within 4Å:- Chain A: D.111, R.283, K.284, K.287
- Ligands: GOL.3
3 PLIP interactions:3 interactions with chain A- Salt bridges: A:R.283, A:K.284, A:K.287
SO4.9: 3 residues within 4Å:- Chain A: M.128, R.186, H.244
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.186, A:H.244
SO4.10: 5 residues within 4Å:- Chain A: N.151, D.154, G.155, K.156, E.157
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.151, A:G.153, A:G.155, A:E.157, A:E.157, A:E.157
SO4.17: 3 residues within 4Å:- Chain B: M.128, R.186, H.244
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.186, B:H.244
SO4.18: 6 residues within 4Å:- Chain B: N.151, G.153, D.154, G.155, K.156, E.157
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.151, B:G.155, B:K.156, B:E.157, B:E.157
SO4.19: 3 residues within 4Å:- Chain B: H.20, A.55, K.56
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.56
- Salt bridges: B:H.20
SO4.20: 4 residues within 4Å:- Chain B: K.286, D.296, T.299, E.300
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:D.296, B:E.300
- Salt bridges: B:K.286, A:K.216
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Furukawa, N. et al., The ternary complex structure of d-mandelate dehydrogenase with NADH and anilino(oxo)acetate. Biochem. Biophys. Res. Commun. (2017)
- Release Date
- 2017-04-05
- Peptides
- 2-dehydropantoate 2-reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x AOT: 2-oxidanylidene-2-phenylazanyl-ethanoic acid(Non-covalent)
- 9 x GOL: GLYCEROL(Non-functional Binders)
- 7 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Furukawa, N. et al., The ternary complex structure of d-mandelate dehydrogenase with NADH and anilino(oxo)acetate. Biochem. Biophys. Res. Commun. (2017)
- Release Date
- 2017-04-05
- Peptides
- 2-dehydropantoate 2-reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B