- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x AOT: 2-oxidanylidene-2-phenylazanyl-ethanoic acid(Non-covalent)
AOT.2: 10 residues within 4Å:- Chain A: N.105, M.128, T.130, K.187, N.191, N.195, I.254, P.259, S.260
- Ligands: NAD.1
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:T.130, A:I.254
- Hydrogen bonds: A:N.105, A:K.187, A:N.191, A:N.195, A:S.260
- Salt bridges: A:K.187
- pi-Cation interactions: A:K.187
AOT.15: 10 residues within 4Å:- Chain B: N.105, M.128, T.130, K.187, V.190, N.191, N.195, P.259, S.260
- Ligands: NAD.14
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:T.130, B:V.190
- Hydrogen bonds: B:N.105, B:K.187, B:N.191, B:N.195, B:S.260
- pi-Cation interactions: B:K.187
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 9 residues within 4Å:- Chain A: I.107, G.108, E.110, H.181, I.184, Y.185, E.232, K.284
- Ligands: SO4.7
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.108, A:K.284, A:K.284
- Water bridges: A:H.109
GOL.4: 9 residues within 4Å:- Chain A: R.14, T.130, A.131, G.132, K.140, L.141, F.142, H.257
- Ligands: SO4.9
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.14, A:T.130, A:T.130, A:F.142, A:F.142
GOL.5: 7 residues within 4Å:- Chain A: W.32, L.133, E.134, G.135, N.268, R.270
- Ligands: NAD.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.134, A:R.270
GOL.6: 5 residues within 4Å:- Chain A: N.47, E.52, E.134, V.139, K.140
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.47
GOL.16: 8 residues within 4Å:- Chain B: I.107, G.108, E.110, H.181, I.184, Y.185, E.232, K.284
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:G.108, B:E.110, B:H.181, B:H.181, B:Y.185, B:E.232, B:K.284
- 9 x SO4: SULFATE ION(Non-functional Binders)
SO4.7: 5 residues within 4Å:- Chain A: D.111, R.283, K.284, K.287
- Ligands: GOL.3
3 PLIP interactions:3 interactions with chain A- Salt bridges: A:R.283, A:K.284, A:K.287
SO4.8: 2 residues within 4Å:- Chain A: R.186, H.244
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.186, A:H.244
SO4.9: 4 residues within 4Å:- Chain A: H.257, Y.258, Q.263
- Ligands: GOL.4
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.258, A:Q.263
- Salt bridges: A:H.257
SO4.10: 3 residues within 4Å:- Chain A: G.155, K.156, E.157
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:G.155, A:G.155, A:K.156, A:E.157
SO4.11: 2 residues within 4Å:- Chain A: G.143, S.144
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.144, A:S.144
SO4.12: 5 residues within 4Å:- Chain A: M.128, H.244, S.247, C.248, T.253
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.247, A:S.247
- Water bridges: A:H.244
- Salt bridges: A:H.244
SO4.13: 3 residues within 4Å:- Chain A: H.20, A.55, K.56
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.56
- Salt bridges: A:H.20
SO4.17: 6 residues within 4Å:- Chain B: N.151, G.153, D.154, G.155, K.156, E.157
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.151, B:N.151, B:G.155, B:K.156, B:E.157, B:E.157
SO4.18: 1 residues within 4Å:- Chain B: K.233
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:K.233
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Furukawa, N. et al., The ternary complex structure of d-mandelate dehydrogenase with NADH and anilino(oxo)acetate. Biochem. Biophys. Res. Commun. (2017)
- Release Date
- 2017-04-05
- Peptides
- 2-dehydropantoate 2-reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x AOT: 2-oxidanylidene-2-phenylazanyl-ethanoic acid(Non-covalent)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- 9 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Furukawa, N. et al., The ternary complex structure of d-mandelate dehydrogenase with NADH and anilino(oxo)acetate. Biochem. Biophys. Res. Commun. (2017)
- Release Date
- 2017-04-05
- Peptides
- 2-dehydropantoate 2-reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D