- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 8 residues within 4Å:- Chain A: K.630, T.633, T.634, R.637, H.644, Y.647, Y.648
- Ligands: EDO.4
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.637, A:H.644, A:Y.648
EDO.4: 9 residues within 4Å:- Chain A: V.629, K.630, T.633, Y.647, G.706, H.707, S.710
- Ligands: EDO.3, FLC.6
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.633, A:H.707, A:S.710
- Water bridges: A:K.630
EDO.5: 7 residues within 4Å:- Chain A: V.612, H.613, K.614, R.615, M.616, L.617, Y.731
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.613, A:M.616, A:L.617
- Water bridges: A:M.618, A:M.618
EDO.8: 4 residues within 4Å:- Chain B: K.100, S.104, T.105, Q.106
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.105, B:Q.106
EDO.9: 5 residues within 4Å:- Chain A: Y.9
- Chain B: Y.176, A.177, T.178, I.179
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:A.177, B:T.178, B:T.178, B:I.179
EDO.10: 8 residues within 4Å:- Chain A: S.57
- Chain B: K.630, T.633, T.634, R.637, H.644, Y.647, Y.648
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.634, B:R.637, B:H.644, B:Y.648
- Water bridges: B:K.630
- 2 x FLC: CITRATE ANION(Non-covalent)
FLC.6: 8 residues within 4Å:- Chain A: R.80, R.651, N.703, I.704, G.706, H.707, H.762
- Ligands: EDO.4
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:N.703, A:G.706
- Water bridges: A:R.80, A:K.630, A:Y.648, A:H.707, A:H.762
- Salt bridges: A:R.80, A:K.630, A:R.651, A:H.707, A:H.762
FLC.11: 8 residues within 4Å:- Chain B: R.80, R.651, N.703, I.704, S.705, G.706, H.707, H.762
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:N.703, B:I.704, B:G.706
- Water bridges: B:R.651, B:R.651
- Salt bridges: B:R.80, B:K.630, B:R.651, B:H.707, B:H.707, B:H.762
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamichi, Y. et al., Crystal structure of the capping enzyme P5 from Rice Dwarf Virus. To Be Published
- Release Date
- 2018-02-28
- Peptides
- mRNA capping enzyme P5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x FLC: CITRATE ANION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamichi, Y. et al., Crystal structure of the capping enzyme P5 from Rice Dwarf Virus. To Be Published
- Release Date
- 2018-02-28
- Peptides
- mRNA capping enzyme P5: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B