SMTL ID : 5xn2.1 (1 other biounit)

HIV-1 reverse transcriptase Q151M:DNA:dGTP ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 10 residues within 4Å: Chain B: V.37, W.40, R.94, E.95, K.98, K.411, E.415, E.429, W.430, F.432 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:K.411, B:W.430, B:E.95, B:K.98, B:K.98, B:W.430, B:W.430 Water bridges: B:R.94, B:R.94, B:R.94, B:E.95

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: V.113, D.187, K.222 Ligands: DGT.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:V.113, A:D.187

1 x DGT: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

DGT.3: 17 residues within 4Å: Chain A: K.67, R.74, L.76, V.113, G.114, D.115, A.116, Y.117, M.153, G.154, M.186, D.187, K.222 Chain C: C.5, G.6, C.38 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.117 Hydrogen bonds: A:D.115, A:A.116, A:Y.117 Salt bridges: A:K.67, A:K.67, A:R.74, A:R.74, A:K.222, A:K.222, A:K.222 pi-Cation interactions: A:R.74

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 9 residues within 4Å: Chain A: K.368, T.371, Y.407, Q.409, A.410, T.411 Chain B: I.409, Q.410, T.413 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:K.368, B:Q.410, B:T.413, B:T.413 Water bridges: A:T.371, A:T.411 GOL.5: 8 residues within 4Å: Chain A: L.94, G.95, V.383 Chain B: Q.39, W.40, P.41, P.149, N.153 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.39, B:N.153, A:L.94 Water bridges: B:S.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yasutake, Y. et al., HIV-1 with HBV-associated Q151M substitution in RT becomes highly susceptible to entecavir: structural insights into HBV-RT inhibition by entecavir. Sci Rep (2018)

Release Date

2018-02-07

Peptides

Pol protein: A
Pol protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pol protein

Pol protein

Related Entries With Identical Sequence