SMTL ID : 7dbn.2 (1 other biounit)

HIV-1 reverse transcriptase mutant Q151M/Y115F/F116Y/M184V/F160M:DNA:dCTP ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.67 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DCP: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

DCP.1: 14 residues within 4Å: Chain A: K.67, R.74, D.112, G.114, D.115, A.116, F.117, M.153, D.187, K.222 Chain C: G.5, C.6, G.38 Ligands: MG.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.117 Hydrogen bonds: A:R.74, A:V.113, A:D.115, A:A.116, A:F.117 Salt bridges: A:K.67, A:K.67, A:R.74, A:K.222, A:K.222, A:K.222

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: K.368, T.371, Q.409, A.410, T.411 Chain B: I.409, Q.410, T.413 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.410, A:T.411, B:Q.410 Water bridges: A:K.368, A:T.371, A:T.371 GOL.4: 8 residues within 4Å: Chain A: L.94, V.383 Chain B: Q.39, W.40, P.41, P.149, S.150, N.153 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.39, B:N.153, A:L.94 Water bridges: B:L.42, B:S.150, A:V.383

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 7 residues within 4Å: Chain A: V.113, G.114, D.115, A.116, D.187, K.222 Ligands: DCP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:V.113, A:D.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakajima, S. et al., Biochemical and Structural Properties of Entecavir-Resistant Hepatitis B Virus Polymerase with L180M/M204V Mutations. J.Virol. (2021)

Release Date

2021-08-04

Peptides

HIV-1 reverse transcriptase p66 subunit: A
HIV-1 RT p51 subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

HIV-1 reverse transcriptase p66 subunit

HIV-1 RT p51 subunit

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