SMTL ID : 6kdo.2 (1 other biounit)

HIV-1 reverse transcriptase with Q151M/Y115F/F116Y/M184V/F160M:DNA:lamivudine 5'-triphosphate ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 1RZ: Lamivudine Triphosphate(Non-covalent)

1RZ.1: 7 residues within 4Å: Chain A: R.74, F.117, M.153, D.187 Chain C: G.5, C.6, G.38 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.74 pi-Cation interactions: A:R.74

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: K.368, Y.407, Q.409, A.410, T.411 Chain B: I.409, Q.410, T.413 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.409, A:T.411, B:Q.410, B:T.413 Water bridges: A:V.367, A:T.371 GOL.3: 8 residues within 4Å: Chain A: L.94, V.383 Chain B: Q.39, W.40, P.41, P.149, S.150, N.153 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.39, B:N.153, A:L.94 Water bridges: B:S.150, B:N.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yasutake, Y. et al., Structural features in common of HBV and HIV-1 resistance against chirally-distinct nucleoside analogues entecavir and lamivudine. Sci Rep (2020)

Release Date

2020-03-04

Peptides

HIV-1 reverse transcriptase p66 subunit: A
HIV-1 RT p51 subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

HIV-1 reverse transcriptase p66 subunit

HIV-1 RT p51 subunit

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