SMTL ID : 5xvg.1

Crystal Structure of PAK4 in complex with inhibitor CZH226

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 8FX: [6-chloranyl-4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]quinazolin-2-yl]-[(3R)-3-methylpiperazin-1-yl]methanone(Non-covalent)

8FX.1: 17 residues within 4Å: Chain A: I.29, G.30, E.31, G.32, V.37, A.50, K.52, M.97, E.98, F.99, L.100, E.101, G.103, D.146, L.149, S.159, D.160 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.29, A:A.50, A:K.52, A:F.99, A:L.149 Hydrogen bonds: A:E.98, A:L.100, A:L.100, A:D.146 Water bridges: A:E.31 Halogen bonds: A:E.101

5 x EOH: ETHANOL(Non-functional Binders)

EOH.2: 1 residues within 4Å: Chain A: N.25 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.25 EOH.3: 6 residues within 4Å: Chain A: R.253, A.260, Q.261, R.262, A.263, E.267 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.253, A:Q.261 EOH.4: 5 residues within 4Å: Chain A: D.24, N.25, A.40, T.41, L.48 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.48 Hydrogen bonds: A:I.39, A:T.41 EOH.5: 4 residues within 4Å: Chain A: S.33, K.58, Q.59, Q.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.58, A:Q.60 Water bridges: A:R.61 EOH.6: 6 residues within 4Å: Chain A: S.33, T.34, K.52, D.160, F.161, G.162 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.34 Hydrogen bonds: A:K.52, A:D.160, A:G.162

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 2 residues within 4Å: Chain A: N.219, E.220 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.219, A:N.219 EDO.8: 3 residues within 4Å: Chain A: N.290, R.291, T.292 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.292 EDO.9: 8 residues within 4Å: Chain A: E.68, M.72, V.81, M.83, M.97, S.159, D.160, F.161 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.68, A:E.68, A:V.81, A:D.160, A:F.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hao, C. et al., Structure-Based Design of 6-Chloro-4-aminoquinazoline-2-carboxamide Derivatives as Potent and Selective p21-Activated Kinase 4 (PAK4) Inhibitors. J. Med. Chem. (2018)

Release Date

2018-02-07

Peptides

Serine/threonine-protein kinase PAK 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase PAK 4

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