SMTL ID : 5yjz.2 (1 other biounit)

The native crystal structure of Rv3197 from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

homo-hexamer

Ligands

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: R.131, R.220, A.239, S.240 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.131, A:R.131, A:R.220, A:S.240, A:S.240 GOL.2: 7 residues within 4Å: Chain A: P.282, R.283, L.285, G.286, P.317, G.318, G.319 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.318 GOL.8: 4 residues within 4Å: Chain B: R.131, R.220, A.239, S.240 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.131, B:R.131, B:R.220, B:S.240, B:S.240 GOL.9: 7 residues within 4Å: Chain B: P.282, R.283, L.285, G.286, P.317, G.318, G.319 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.318 GOL.15: 4 residues within 4Å: Chain C: R.131, R.220, A.239, S.240 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.131, C:R.131, C:R.220, C:S.240, C:S.240 GOL.16: 7 residues within 4Å: Chain C: P.282, R.283, L.285, G.286, P.317, G.318, G.319 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.318 GOL.22: 4 residues within 4Å: Chain D: R.131, R.220, A.239, S.240 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:R.131, D:R.131, D:R.220, D:S.240, D:S.240 GOL.23: 7 residues within 4Å: Chain D: P.282, R.283, L.285, G.286, P.317, G.318, G.319 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:G.318 GOL.29: 4 residues within 4Å: Chain E: R.131, R.220, A.239, S.240 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:R.131, E:R.131, E:R.220, E:S.240, E:S.240 GOL.30: 7 residues within 4Å: Chain E: P.282, R.283, L.285, G.286, P.317, G.318, G.319 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:G.318 GOL.36: 4 residues within 4Å: Chain F: R.131, R.220, A.239, S.240 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:R.131, F:R.131, F:R.220, F:S.240, F:S.240 GOL.37: 7 residues within 4Å: Chain F: P.282, R.283, L.285, G.286, P.317, G.318, G.319 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:G.318

30 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: R.131, W.153 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: Q.350, R.351, Q.403 Ligand excluded by PLIP SO4.5: 5 residues within 4Å: Chain A: V.195, Q.196, G.197, D.200 Chain D: R.393 Ligand excluded by PLIP SO4.6: 1 residues within 4Å: Chain A: R.118 Ligand excluded by PLIP SO4.7: 1 residues within 4Å: Chain A: R.213 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain B: R.131, W.153 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain B: Q.350, R.351, Q.403 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain B: V.195, Q.196, G.197, D.200 Chain F: R.393 Ligand excluded by PLIP SO4.13: 1 residues within 4Å: Chain B: R.118 Ligand excluded by PLIP SO4.14: 1 residues within 4Å: Chain B: R.213 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain C: R.131, W.153 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain C: Q.350, R.351, Q.403 Ligand excluded by PLIP SO4.19: 5 residues within 4Å: Chain C: V.195, Q.196, G.197, D.200 Chain E: R.393 Ligand excluded by PLIP SO4.20: 1 residues within 4Å: Chain C: R.118 Ligand excluded by PLIP SO4.21: 1 residues within 4Å: Chain C: R.213 Ligand excluded by PLIP SO4.24: 2 residues within 4Å: Chain D: R.131, W.153 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain D: Q.350, R.351, Q.403 Ligand excluded by PLIP SO4.26: 5 residues within 4Å: Chain A: R.393 Chain D: V.195, Q.196, G.197, D.200 Ligand excluded by PLIP SO4.27: 1 residues within 4Å: Chain D: R.118 Ligand excluded by PLIP SO4.28: 1 residues within 4Å: Chain D: R.213 Ligand excluded by PLIP SO4.31: 2 residues within 4Å: Chain E: R.131, W.153 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain E: Q.350, R.351, Q.403 Ligand excluded by PLIP SO4.33: 5 residues within 4Å: Chain C: R.393 Chain E: V.195, Q.196, G.197, D.200 Ligand excluded by PLIP SO4.34: 1 residues within 4Å: Chain E: R.118 Ligand excluded by PLIP SO4.35: 1 residues within 4Å: Chain E: R.213 Ligand excluded by PLIP SO4.38: 2 residues within 4Å: Chain F: R.131, W.153 Ligand excluded by PLIP SO4.39: 3 residues within 4Å: Chain F: Q.350, R.351, Q.403 Ligand excluded by PLIP SO4.40: 5 residues within 4Å: Chain B: R.393 Chain F: V.195, Q.196, G.197, D.200 Ligand excluded by PLIP SO4.41: 1 residues within 4Å: Chain F: R.118 Ligand excluded by PLIP SO4.42: 1 residues within 4Å: Chain F: R.213 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Q. et al., Discovery of the first macrolide antibiotic binding protein in Mycobacterium tuberculosis: a new antibiotic resistance drug target. Protein Cell (2018)

Release Date

2018-02-07

Peptides

Probable conserved ATP-binding protein ABC transporter: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Probable conserved ATP-binding protein ABC transporter

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