SMTL ID : 5yk0.1 (1 other biounit)

The complex structure of Rv3197-ADP from Mycobacterium tuberculosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: A.141, S.142, A.143, S.144, V.148, A.160, K.162, P.235, Q.247, E.248, W.249, I.250, I.308, D.309 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.144, A:S.144, A:Q.247, A:I.250, A:D.309 Water bridges: A:I.145, A:K.162, A:K.162, A:E.215, A:G.295, A:D.309 Salt bridges: A:K.162, A:K.162

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: Q.350, R.351, Q.403 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.351, A:Q.403, A:Q.403 Salt bridges: A:R.351 SO4.3: 2 residues within 4Å: Chain A: R.131, W.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.153 Salt bridges: A:R.131 SO4.4: 2 residues within 4Å: Chain A: H.229, R.284 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.231, A:R.231, A:R.284, A:R.284 Salt bridges: A:H.229, A:R.284 SO4.5: 4 residues within 4Å: Chain A: V.195, Q.196, G.197, D.200 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.197 Water bridges: A:V.198, A:V.199, A:D.200 SO4.6: 2 residues within 4Å: Chain A: K.103, R.118 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.103, A:K.115, A:R.118 SO4.7: 1 residues within 4Å: Chain A: R.213 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.213

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 4 residues within 4Å: Chain A: R.131, R.220, A.239, S.240 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.131, A:R.131, A:S.240 GOL.9: 7 residues within 4Å: Chain A: P.282, R.283, L.285, G.286, P.317, G.318, G.319 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.286 GOL.10: 5 residues within 4Å: Chain A: D.268, L.269, T.272, H.430, P.432 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.272, A:H.430 Water bridges: A:E.265, A:L.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Q. et al., Discovery of the first macrolide antibiotic binding protein in Mycobacterium tuberculosis: a new antibiotic resistance drug target. Protein Cell (2018)

Release Date

2018-02-07

Peptides

Probable conserved ATP-binding protein ABC transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable conserved ATP-binding protein ABC transporter

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