SMTL ID : 5yk1.1 (1 other biounit)

The complex structure of Rv3197-AMPPNP from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 13 residues within 4Å: Chain A: A.141, S.142, A.143, S.144, V.148, A.160, K.162, Q.247, E.248, W.249, I.250, I.308, D.309 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.142, A:S.144, A:S.144, A:S.144, A:Q.247, A:I.250, A:D.309, A:D.309 Salt bridges: A:K.162

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: Q.350, R.351, Q.403 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.351, A:Q.403, A:Q.403 Salt bridges: A:R.351 SO4.3: 2 residues within 4Å: Chain A: R.131, W.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.153 Water bridges: A:S.154 Salt bridges: A:R.131 SO4.4: 3 residues within 4Å: Chain A: V.195, Q.196, G.197 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.197 Water bridges: A:K.187, A:K.187, A:V.198 SO4.5: 2 residues within 4Å: Chain A: K.103, R.118 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.103, A:R.118 SO4.6: 1 residues within 4Å: Chain A: R.213 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.213

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 5 residues within 4Å: Chain A: D.268, L.269, T.272, H.430, P.432 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.272, A:H.430 Water bridges: A:E.265, A:L.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Q. et al., Discovery of the first macrolide antibiotic binding protein in Mycobacterium tuberculosis: a new antibiotic resistance drug target. Protein Cell (2018)

Release Date

2018-02-07

Peptides

Probable conserved ATP-binding protein ABC transporter: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable conserved ATP-binding protein ABC transporter

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