SMTL ID : 5yxl.2 (1 other biounit)

A ligand M binding to FXR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

1 x ALA- LEU- LEU- ARG- TYR- LEU- LEU- ASP: Peptide from Nuclear receptor coactivator 2(Non-covalent)

ALA-LEU-LEU-ARG-TYR-LEU-LEU-ASP.1: 12 residues within 4Å: Chain A: Q.53, V.56, K.60, F.65, Q.66, H.70, Q.73, I.74, K.78, P.220, L.221, I.225 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:K.60, A:F.65, A:I.74, A:K.78, A:L.221 Hydrogen bonds: A:K.60, A:Q.73, A:Q.73 Water bridges: A:E.224

1 x NIW: 2-methoxyethyl propan-2-yl 2,6-dimethyl-4-(3-nitrophenyl)pyridine-3,5-dicarboxylate(Non-covalent)

NIW.2: 18 residues within 4Å: Chain A: F.41, L.44, T.45, M.47, A.48, H.51, V.82, M.85, F.86, S.89, I.114, Y.118, M.122, F.200, H.203, H.204, M.207, W.226 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.41, A:L.44, A:V.82, A:F.86, A:I.114, A:M.207, A:W.226, A:W.226 Hydrogen bonds: A:H.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yi, L. et al., A ligand M binding to FXR. To Be Published

Release Date

2019-03-13

Peptides

Bile acid receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Bile acid receptor

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