SMTL ID : 5z9t.1 (1 other biounit)

a new PL6 alginate lyase complex with trisaccharide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x LGU- LGU- LGU: alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid

LGU-LGU-LGU.1: 21 residues within 4Å: Chain A: R.146, F.147, K.184, L.186, Q.215, N.252, S.253, E.255, R.258, D.261, S.262, R.285, E.286, S.289, K.291, R.312, H.313, N.394, L.427 Ligands: NA.2, MLI.3 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.252, A:S.289, A:K.291, A:N.394 Water bridges: A:S.253, A:S.253 Salt bridges: A:R.285, A:K.291, A:R.312

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 7 residues within 4Å: Chain A: N.252, S.253, E.255, E.284, R.285, E.286 Ligands: LGU-LGU-LGU.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.252, A:S.253, A:R.285, A:R.285, A:E.286, A:E.286 Water bridges: A:S.289

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.3: 8 residues within 4Å: Chain A: R.285, R.312, R.336, Y.338, N.362, A.363, Q.396 Ligands: LGU-LGU-LGU.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.396 Water bridges: A:R.312, A:Q.396, A:R.424 Salt bridges: A:R.285, A:R.285, A:R.312, A:R.312, A:R.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyu, Q. et al., Structural insights into a novel Ca2+-independent PL-6 alginate lyase from Vibrio OU02 identify the possible subsites responsible for product distribution. Biochim Biophys Acta Gen Subj (2019)

Release Date

2019-03-27

Peptides

alginate lyase AlyF-OU02: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

alginate lyase AlyF-OU02

Related Entries With Identical Sequence