SMTL ID : 6itg.2 (1 other biounit)

a new alginate lyase (PL6) from Vibrio splendidus OU02

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: P.235, D.282, E.284, R.285, A.306, L.331, V.358, R.366 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.282, A:E.284, A:R.366, A:R.366

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 7 residues within 4Å: Chain A: R.285, R.312, R.336, Y.338, N.362, A.363, Q.396 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Y.338, A:Q.396 Water bridges: A:R.285, A:R.285, A:R.285, A:E.286, A:R.312, A:Y.338 Salt bridges: A:R.285, A:R.285, A:R.312, A:R.312, A:R.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyu, Q. et al., Structural insights into a novel Ca2+-independent PL-6 alginate lyase from Vibrio OU02 identify the possible subsites responsible for product distribution. Biochim Biophys Acta Gen Subj (2019)

Release Date

2019-05-01

Peptides

Alginate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Alginate lyase

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