SMTL ID : 5zdz.2 (1 other biounit)

Hairpin Forming Complex, RAG1/2-Nicked 12RSS/23RSS complex in Ca2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: D.219, G.220, E.581 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.219, A:G.220, A:E.581, H2O.1, H2O.1

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.346, C.349, H.556, H.561 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.346, A:C.349, A:H.556, A:H.561

1 x K: POTASSIUM ION(Non-covalent)

K.3: 2 residues within 4Å: Chain A: E.268, S.582 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.268

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: R.247, R.322, D.569, W.575 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.247, A:R.322

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, M.S. et al., Cracking the DNA Code for V(D)J Recombination. Mol. Cell (2018)

Release Date

2018-04-25

Peptides

mouse RAG1: A
mouse RAG2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

mouse RAG1

mouse RAG2

Related Entries With Identical Sequence