SMTL ID : 5ze1.1 (1 other biounit)

Hairpin Forming Complex, RAG1/2-Nicked 12RSS/23RSS complex in 2mM Mn2+ for 10 min at 4'C

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.346, C.349, H.556, H.561 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.346, A:C.349, A:H.556, A:H.561

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: D.219, G.220, E.581, N.584 Ligands: MN.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.219, A:E.581, A:E.581 MN.3: 3 residues within 4Å: Chain A: D.219, D.327 Ligands: MN.2 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.219, A:D.327, H2O.1

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 8 residues within 4Å: Chain A: E.335, L.337, T.347, R.367, N.372, T.406, V.407, P.408 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.372, A:T.406, A:V.407

1 x K: POTASSIUM ION(Non-covalent)

K.5: 2 residues within 4Å: Chain A: E.268, S.582 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.268, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, M.S. et al., Cracking the DNA Code for V(D)J Recombination. Mol. Cell (2018)

Release Date

2018-04-25

Peptides

mouse RAG1: A
mouse RAG2: B
HMGB1 A-B box: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
N

mouse RAG1

mouse RAG2

HMGB1 A-B box

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