SMTL ID : 5ze0.1 (1 other biounit)

Hairpin Forming Complex, RAG1/2-Nicked(with Dideoxy) 12RSS/23RSS complex in Mg2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.219, G.220, E.581, N.584 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:G.220

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.346, C.349, H.556, H.561 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.346, A:C.349, A:H.556, A:H.561

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: V.164, D.165, E.166 Chain B: P.19, Y.76, S.262, Y.279, W.319 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.166, B:S.262, B:S.262 EDO.4: 8 residues within 4Å: Chain A: E.335, L.337, T.347, R.367, N.372, T.406, V.407, P.408 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.372, A:T.406, A:V.407

1 x K: POTASSIUM ION(Non-covalent)

K.5: 2 residues within 4Å: Chain A: E.268, S.582 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.268, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, M.S. et al., Cracking the DNA Code for V(D)J Recombination. Mol. Cell (2018)

Release Date

2018-04-25

Peptides

mouse RAG1: A
mouse RAG2: B
HMGB1 A-B box: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
N

mouse RAG1

mouse RAG2

HMGB1 A-B box

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