SMTL ID : 5zh1.1 (1 other biounit)

Crystal structure of NDM-1 at pH7.5 (Imidazole) with 2 molecules per asymmetric unit

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.92, H.94, H.161, C.180 Ligands: ZN.2, OH.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.92, A:H.94, A:H.161, OH.3 ZN.2: 5 residues within 4Å: Chain A: D.96, C.180, H.222 Ligands: ZN.1, OH.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.96, A:C.180, A:H.222, OH.3

1 x OH: HYDROXIDE ION(Non-covalent)

OH.3: 8 residues within 4Å: Chain A: H.92, H.94, D.96, H.161, C.180, H.222 Ligands: ZN.1, ZN.2 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.96

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.4: 7 residues within 4Å: Chain A: A.93, H.94, L.120, E.124, T.162, D.164, D.195 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Active-Site Conformational Fluctuations Promote the Enzymatic Activity of NDM-1. Antimicrob. Agents Chemother. (2018)

Release Date

2018-08-22

Peptides

Metallo-beta-lactamase type 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Metallo-beta-lactamase type 2

Related Entries With Identical Sequence